Wall clock time and date at job start Sun Mar 29 2020 21:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99806 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99700 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.38606 * 119.99817 * 179.72388 * 11 10 9 13 13 N 1.29713 * 124.94403 * 359.97438 * 12 11 10 14 14 C 1.32148 * 116.86605 * 179.76887 * 13 12 11 15 15 Cl 1.73590 * 122.72284 * 180.26977 * 14 13 12 16 16 C 1.33415 * 114.55243 * 0.52171 * 14 13 12 17 17 S 1.70960 * 124.94242 * 180.27933 * 12 11 10 18 18 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 20 20 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 21 21 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 22 22 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 23 23 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 24 24 H 1.08001 * 125.94628 * 179.76682 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.2055 -6.1312 -0.0025 13 7 3.4978 -6.2430 -0.0100 14 6 3.9911 -7.4690 -0.0098 15 17 5.6962 -7.7943 -0.0123 16 6 3.0723 -8.4363 -0.0128 17 16 1.4813 -7.6798 -0.0081 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5575 -0.8880 20 1 0.6246 -2.5562 0.8919 21 1 2.8724 -3.6040 0.8910 22 1 2.8711 -3.6048 -0.8890 23 1 0.5425 -4.9308 0.0039 24 1 3.2696 -9.4981 -0.0168 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858480365.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:07 Heat of formation + Delta-G solvation = 12.120874 kcal Electronic energy + Delta-G solvation = -11417.170489 eV Core-core repulsion = 9096.207673 eV Total energy + Delta-G solvation = -2320.962817 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.013 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.74705 -37.89036 -37.08973 -35.04726 -32.02617 -29.95328 -27.08168 -25.03063 -23.28528 -20.78742 -20.02901 -18.53135 -17.36993 -16.63137 -16.50362 -16.25309 -15.94646 -15.31061 -14.42448 -14.04751 -13.33452 -13.25222 -13.04053 -12.85415 -12.50385 -12.25641 -12.03707 -11.62458 -11.40900 -11.05125 -10.65546 -10.58473 -10.25040 -8.73368 -8.25180 -6.35320 -0.11259 0.02342 0.26038 1.30394 1.40896 1.42272 1.55141 1.73392 2.30468 2.47010 3.10105 3.83428 4.33571 4.44118 4.49662 4.65354 4.85545 5.35534 5.56903 5.65429 5.85565 6.06939 6.17989 6.77814 6.91600 7.34136 8.86966 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.040246 B = 0.005228 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.553543 B = 5354.348132 C = 6029.449994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.021 3.979 10 C 0.160 3.840 11 N -0.682 5.682 12 C 0.313 3.687 13 N -0.591 5.591 14 C 0.143 3.857 15 Cl -0.014 7.014 16 C -0.286 4.286 17 S 0.181 5.819 18 H 0.266 0.734 19 H 0.009 0.991 20 H 0.009 0.991 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.423 0.577 24 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 -17.197 -0.009 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.017 4.017 10 C 0.035 3.965 11 N -0.321 5.321 12 C -0.059 4.059 13 N -0.320 5.320 14 C -0.015 4.015 15 Cl 0.014 6.986 16 C -0.429 4.429 17 S 0.429 5.571 18 H 0.075 0.925 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.262 0.738 24 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.938 -16.829 -0.012 17.083 hybrid contribution 1.065 0.983 -0.003 1.449 sum 4.003 -15.846 -0.015 16.343 Atomic orbital electron populations 1.70064 1.07538 1.27943 1.51091 1.25864 0.95786 1.03095 0.94439 0.85394 0.78986 0.78788 0.77870 1.18942 1.20265 1.20250 1.21459 0.93582 0.91771 1.51384 0.92254 1.19154 0.94345 0.91792 0.96392 1.21229 0.94608 0.80786 0.99909 1.44380 1.08590 1.01165 1.77952 1.23567 0.90684 0.93939 0.97682 1.65726 1.10987 1.25573 1.29750 1.20085 0.88752 0.87813 1.04822 1.98367 1.09322 1.93897 1.97006 1.26493 0.92470 1.05191 1.18724 1.83686 1.07158 0.93677 1.72599 0.92547 0.97306 0.97282 0.93468 0.93476 0.73813 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 13.29 21.45 0.28 -53.76 14 2 C 0.01 0.39 5.46 84.65 0.46 0.85 14 3 Si 0.96 43.44 29.54 68.60 2.03 45.46 14 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 14 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 14 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 14 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 14 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 14 9 C 0.02 1.04 5.09 29.85 0.15 1.19 14 10 C 0.16 6.71 5.89 86.38 0.51 7.22 14 11 N -0.68 -23.12 5.71 -351.01 -2.01 -25.13 14 12 C 0.31 9.88 8.09 179.31 1.45 11.33 14 13 N -0.59 -20.65 10.15 -192.81 -1.96 -22.61 14 14 C 0.14 4.12 7.30 83.55 0.61 4.73 14 15 Cl -0.01 -0.36 29.21 -2.72 -0.08 -0.44 14 16 C -0.29 -6.29 11.20 66.73 0.75 -5.54 14 17 S 0.18 3.97 23.22 -56.49 -1.31 2.65 14 18 H 0.27 14.53 8.31 -92.71 -0.77 13.76 14 19 H 0.01 0.45 8.14 -2.38 -0.02 0.43 14 20 H 0.01 0.46 8.14 -2.39 -0.02 0.44 14 21 H 0.05 2.06 8.14 -2.38 -0.02 2.05 14 22 H 0.05 2.06 8.14 -2.39 -0.02 2.04 14 23 H 0.42 12.49 8.60 -92.71 -0.80 11.69 14 24 H 0.21 3.11 8.06 -2.91 -0.02 3.09 14 Total: -1.00 -62.47 249.84 1.55 -60.92 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 0.43 Total: 2.96 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.16 Total: -10.07 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -3.68 Total: -101.49 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.31 Total: 2.65 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.44 kcal Total: -62.47 1.55 -60.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858480365.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.040 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds