Wall clock time and date at job start Sun Mar 29 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 N 1.29060 * 124.90483 * 90.00069 * 12 11 10 14 14 C 1.31811 * 117.11436 * 180.02562 * 13 12 11 15 15 Cl 1.73603 * 122.75986 * 179.97438 * 14 13 12 16 16 C 1.33719 * 114.48011 * 359.97438 * 14 13 12 17 17 S 1.70970 * 124.91118 * 269.69958 * 12 11 10 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 21 21 H 1.00904 * 110.99860 * 56.04901 * 10 9 7 22 22 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 23 23 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 24 24 H 1.07998 * 126.03970 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 7 3.0105 -6.5742 1.0575 14 6 3.8856 -7.5434 0.8783 15 17 4.6432 -8.3808 2.1969 16 6 4.1419 -7.8287 -0.4027 17 16 3.1640 -6.7574 -1.4030 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8407 -3.5486 0.7809 22 1 0.8810 -4.9812 0.8903 23 1 0.8804 -4.9817 -0.8896 24 1 4.8242 -8.5853 -0.7610 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877482818.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:05 Heat of formation + Delta-G solvation = 35.513387 kcal Electronic energy + Delta-G solvation = -11401.475454 eV Core-core repulsion = 9081.527013 eV Total energy + Delta-G solvation = -2319.948441 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.013 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.76733 -36.69364 -35.45568 -32.64302 -30.50721 -27.87433 -25.55576 -23.21391 -21.53745 -19.89580 -18.41113 -16.52705 -15.88388 -15.14646 -14.88300 -14.50268 -14.24809 -13.41028 -12.96146 -12.27786 -12.10349 -11.73044 -11.59044 -11.33936 -11.08368 -10.79311 -10.72623 -10.06417 -9.71519 -9.51074 -9.27643 -8.75951 -8.52914 -7.51583 -6.08083 -4.10424 0.57954 1.05816 1.48129 2.26245 2.58993 3.30874 3.36691 3.40849 4.29003 4.42137 5.05701 5.07952 5.27989 5.33980 5.52969 5.87885 5.96798 7.06871 7.30076 7.52435 7.68227 8.02001 8.20922 8.45089 8.97597 9.54685 11.02991 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.043893 B = 0.005020 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.766045 B = 5576.098744 C = 5813.044359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.127 3.873 12 C 0.086 3.914 13 N -0.477 5.477 14 C 0.123 3.877 15 Cl -0.017 7.017 16 C -0.270 4.270 17 S 0.190 5.810 18 H 0.262 0.738 19 H 0.032 0.968 20 H -0.008 1.008 21 H 0.337 0.663 22 H 0.058 0.942 23 H 0.092 0.908 24 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -15.956 -1.472 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.006 4.006 12 C -0.192 4.192 13 N -0.193 5.193 14 C -0.037 4.037 15 Cl 0.011 6.989 16 C -0.411 4.411 17 S 0.444 5.556 18 H 0.072 0.928 19 H 0.050 0.950 20 H 0.010 0.990 21 H 0.154 0.846 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.916 -15.551 -2.596 16.840 hybrid contribution 0.633 0.311 1.832 1.963 sum 6.550 -15.240 -0.764 16.606 Atomic orbital electron populations 1.69955 1.06078 1.26954 1.50634 1.24977 0.94900 0.99410 0.95175 0.86448 0.79691 0.82818 0.78161 1.20557 1.21242 1.19818 1.21129 0.93587 0.89991 1.50765 0.91849 1.19621 0.90474 0.86825 0.96253 1.60847 1.21178 0.99867 1.49574 1.20584 0.91101 0.86355 1.02517 1.27179 1.01151 1.00709 0.90194 1.65747 1.11330 1.09567 1.32653 1.20362 0.98376 0.96654 0.88291 1.98381 1.78618 1.74448 1.47480 1.26766 1.10243 1.09103 0.95035 1.84128 1.34020 1.25988 1.11510 0.92802 0.94978 0.98995 0.84595 0.92404 0.89000 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.59 14 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 14 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 14 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 14 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 14 7 C -0.52 -14.39 9.32 -34.44 -0.32 -14.71 14 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 14 9 C 0.19 4.93 5.44 -4.97 -0.03 4.91 14 10 N -0.68 -14.30 6.48 -116.34 -0.75 -15.05 14 11 C 0.13 2.18 6.26 -4.97 -0.03 2.15 14 12 C 0.09 1.35 6.90 -13.44 -0.09 1.25 14 13 N -0.48 -7.86 10.55 -8.97 -0.09 -7.95 14 14 C 0.12 1.75 7.30 -19.15 -0.14 1.61 14 15 Cl -0.02 -0.22 29.22 -51.86 -1.52 -1.73 14 16 C -0.27 -3.18 11.23 29.15 0.33 -2.86 14 17 S 0.19 2.35 23.18 -107.50 -2.49 -0.14 14 18 H 0.26 7.27 8.31 -40.82 -0.34 6.93 14 19 H 0.03 0.86 8.14 -51.93 -0.42 0.43 14 20 H -0.01 -0.21 8.14 -51.93 -0.42 -0.63 14 21 H 0.34 7.12 8.71 -39.29 -0.34 6.78 14 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 14 23 H 0.09 1.45 8.14 -51.93 -0.42 1.02 14 24 H 0.18 1.57 8.06 -52.49 -0.42 1.14 14 LS Contribution 250.94 15.07 3.78 3.78 Total: -1.00 -29.57 250.94 -7.74 -37.31 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -2.00 Total: -0.94 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.38 Total: -6.13 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.11 Total: -48.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.49 Total: -0.14 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.57 -7.74 -37.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482818.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.822 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds