Wall clock time and date at job start Sun Mar 29 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38314 * 120.34701 * 2 1 4 4 N 1.31799 * 120.72812 * 180.02562 * 3 2 1 5 5 C 1.31988 * 121.95375 * 0.02562 * 4 3 2 6 6 C 1.38703 * 120.89342 * 359.97438 * 5 4 3 7 7 C 1.38267 * 120.34645 * 180.02562 * 2 1 3 8 8 N 1.39305 * 111.86088 * 179.97438 * 6 5 4 9 9 C 1.34776 * 124.98182 * 179.97438 * 8 6 5 10 10 O 1.21736 * 120.00032 * 354.90251 * 9 8 6 11 11 C 1.46180 * 120.00069 * 174.90702 * 9 8 6 12 12 H 1.08005 * 119.99799 * 5.07120 * 11 9 8 13 13 C 1.40116 * 120.00067 * 185.07983 * 11 9 8 14 14 N 1.30637 * 120.00188 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99976 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47145 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47055 * 119.99679 * 15 13 11 18 18 H 1.48494 * 109.47278 * 239.99400 * 15 13 11 19 19 C 1.46564 * 110.04214 * 359.97438 * 8 6 5 20 20 C 1.51337 * 130.77589 * 179.97438 * 5 4 3 21 21 H 1.09000 * 109.47480 * 89.99134 * 1 2 3 22 22 H 1.08992 * 109.47174 * 209.99951 * 1 2 3 23 23 H 1.09007 * 109.46513 * 329.99386 * 1 2 3 24 24 H 1.07996 * 119.63430 * 359.75110 * 3 2 1 25 25 H 1.07998 * 120.68356 * 359.97438 * 7 2 1 26 26 H 0.96996 * 120.00025 * 180.02562 * 14 13 11 27 27 H 1.08994 * 110.30165 * 241.07373 * 19 8 6 28 28 H 1.08996 * 110.38070 * 118.96911 * 19 8 6 29 29 H 1.08997 * 110.41228 * 298.80419 * 20 5 4 30 30 H 1.08997 * 110.41251 * 61.13865 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2058 1.1936 0.0000 4 7 3.5237 1.2024 -0.0005 5 6 4.2297 0.0872 -0.0015 6 6 3.6049 -1.1512 -0.0016 7 6 2.2055 -1.1932 -0.0005 8 7 4.5256 -2.1966 -0.0033 9 6 4.2075 -3.5063 -0.0033 10 8 3.0435 -3.8500 0.0920 11 6 5.2601 -4.5141 -0.1176 12 1 6.2975 -4.2136 -0.1196 13 6 4.9233 -5.8700 -0.2248 14 7 3.6686 -6.2335 -0.2221 15 14 6.2685 -7.1578 -0.3716 16 1 7.5957 -6.4919 -0.3497 17 1 6.1722 -8.1061 0.7672 18 1 6.1069 -7.8991 -1.6480 19 6 5.8908 -1.6636 -0.0052 20 6 5.7267 -0.1350 -0.0028 21 1 -0.3634 0.0002 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3632 0.8900 0.5140 24 1 1.6655 2.1287 -0.0041 25 1 1.6824 -2.1381 -0.0005 26 1 3.4354 -7.1722 -0.2959 27 1 6.4216 -1.9864 -0.9008 28 1 6.4257 -1.9869 0.8878 29 1 6.1743 0.2965 -0.8981 30 1 6.1758 0.2966 0.8917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888144539.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:55 Heat of formation + Delta-G solvation = -5.347455 kcal Electronic energy + Delta-G solvation = -15807.353019 eV Core-core repulsion = 13181.145792 eV Total energy + Delta-G solvation = -2626.207227 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47494 -37.73731 -35.67592 -33.15012 -32.68520 -30.19995 -29.98702 -26.51399 -26.18785 -23.32708 -22.44770 -20.89388 -19.44566 -17.14101 -16.06139 -15.67088 -15.50174 -15.39777 -14.76820 -13.85193 -13.56740 -13.02111 -12.84542 -12.45857 -12.34273 -12.26503 -12.01730 -11.59004 -11.51179 -11.34639 -11.31180 -10.97770 -10.66010 -10.39059 -9.79946 -9.06422 -8.97628 -8.61353 -7.91942 -6.95179 -6.48090 -4.94328 1.66625 1.97567 2.99639 3.07889 3.12554 3.79851 4.06404 4.15035 4.42548 4.65229 5.07974 5.27053 5.36149 5.42699 5.54469 5.58152 5.67047 5.84562 5.85588 6.09055 6.12674 6.19228 6.29205 6.34833 6.68574 6.92240 6.99261 7.17864 7.34731 7.84215 8.09868 8.53834 8.72624 8.98270 10.19396 10.42570 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.037173 B = 0.007663 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.052917 B = 3653.244707 C = 4375.322624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.111 4.111 3 C 0.038 3.962 4 N -0.451 5.451 5 C 0.033 3.967 6 C 0.149 3.851 7 C -0.115 4.115 8 N -0.560 5.560 9 C 0.549 3.451 10 O -0.553 6.553 11 C -0.529 4.529 12 H 0.077 0.923 13 C 0.085 3.915 14 N -0.757 5.757 15 Si 0.916 3.084 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.273 1.273 19 C 0.114 3.886 20 C -0.069 4.069 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.274 0.726 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 8.230 -0.109 8.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.122 4.122 4 N -0.159 5.159 5 C -0.110 4.110 6 C 0.045 3.955 7 C -0.144 4.144 8 N -0.282 5.282 9 C 0.359 3.641 10 O -0.435 6.435 11 C -0.565 4.565 12 H 0.095 0.905 13 C -0.137 4.137 14 N -0.385 5.385 15 Si 0.739 3.261 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.009 4.009 20 C -0.107 4.107 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.167 0.833 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.974 8.427 -0.063 8.484 hybrid contribution 0.222 -1.455 -0.090 1.475 sum 1.196 6.973 -0.153 7.076 Atomic orbital electron populations 1.20656 0.90717 1.02615 1.02175 1.20635 0.96974 0.93594 1.00125 1.22091 0.88935 0.96850 1.04336 1.66551 1.08182 1.30204 1.10929 1.21149 0.96062 0.87720 1.06045 1.19544 0.91838 0.89710 0.94375 1.21324 0.91599 0.99325 1.02151 1.46592 1.04544 1.05589 1.71462 1.18405 0.90233 0.77941 0.77543 1.90604 1.21036 1.78126 1.53706 1.20927 0.92841 0.90139 1.52556 0.90498 1.25795 0.96114 0.99286 0.92505 1.69978 1.17659 1.17680 1.33203 0.86171 0.81210 0.80144 0.78525 1.18452 1.19848 1.19865 1.21879 0.85103 0.91208 1.02757 1.20985 0.90685 0.95685 1.03366 0.91271 0.91396 0.91614 0.83550 0.83338 0.91556 0.90418 0.90607 0.89495 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.03 36.00 0.36 -1.04 16 2 C -0.11 -1.95 5.89 -104.59 -0.62 -2.57 16 3 C 0.04 0.64 10.87 -17.54 -0.19 0.45 16 4 N -0.45 -8.53 10.35 -9.12 -0.09 -8.62 16 5 C 0.03 0.65 7.42 -82.04 -0.61 0.04 16 6 C 0.15 3.35 6.62 -83.63 -0.55 2.79 16 7 C -0.11 -2.49 9.23 -38.91 -0.36 -2.85 16 8 N -0.56 -13.21 3.12 -114.49 -0.36 -13.56 16 9 C 0.55 15.36 7.70 -13.07 -0.10 15.26 16 10 O -0.55 -17.23 13.27 5.16 0.07 -17.16 16 11 C -0.53 -14.22 9.04 -35.69 -0.32 -14.54 16 12 H 0.08 1.86 7.12 -52.48 -0.37 1.49 16 13 C 0.08 2.24 5.50 -17.36 -0.10 2.14 16 14 N -0.76 -21.57 11.84 55.55 0.66 -20.91 16 15 Si 0.92 19.02 29.56 -169.99 -5.02 13.99 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 19 C 0.11 2.07 6.23 -3.62 -0.02 2.05 16 20 C -0.07 -1.10 6.94 -27.18 -0.19 -1.29 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 25 H 0.15 3.56 6.39 -52.49 -0.34 3.23 16 26 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 27 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 261.66 15.07 3.94 3.94 Total: -1.00 -32.86 261.66 -6.72 -39.58 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.22 Total: 2.29 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.70 Total: 0.44 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.21 Total: -43.09 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.07 Total: -17.16 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.86 -6.72 -39.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888144539.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.234 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds