Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50693 * 120.00286 * 2 1 4 4 C 1.50703 * 119.99659 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.47289 * 95.00109 * 4 2 1 6 6 C 1.39668 * 120.00181 * 180.02562 * 5 4 2 7 7 C 1.38907 * 120.07584 * 359.71907 * 6 5 4 8 8 C 1.38108 * 119.92754 * 179.77093 * 7 6 5 9 9 C 1.38283 * 120.07138 * 0.50866 * 8 7 6 10 10 C 1.50700 * 119.92567 * 179.72344 * 9 8 7 11 11 C 1.50699 * 109.47004 * 270.02519 * 10 9 8 12 12 H 1.08005 * 120.00240 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00044 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47075 * 59.99835 * 15 13 11 17 17 H 1.48497 * 109.47057 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46908 * 299.99580 * 15 13 11 19 19 C 1.38292 * 120.15211 * 359.74911 * 9 8 7 20 20 C 1.38103 * 120.06781 * 359.97438 * 19 9 8 21 21 H 1.07997 * 120.00386 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99842 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47111 * 269.99904 * 3 2 1 24 24 H 1.08998 * 109.47336 * 30.00254 * 3 2 1 25 25 H 1.09004 * 109.47496 * 150.00314 * 3 2 1 26 26 H 1.09001 * 109.47438 * 334.99890 * 4 2 1 27 27 H 1.09004 * 109.47113 * 215.00145 * 4 2 1 28 28 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 29 29 H 1.08004 * 120.03686 * 0.02562 * 7 6 5 30 30 H 1.07998 * 119.96672 * 180.25929 * 8 7 6 31 31 H 1.08997 * 109.47151 * 30.02383 * 10 9 8 32 32 H 1.08997 * 109.47346 * 150.02750 * 10 9 8 33 33 H 0.96998 * 120.00488 * 179.97438 * 14 13 11 34 34 H 1.07994 * 119.96476 * 180.02562 * 19 9 8 35 35 H 1.08003 * 120.03201 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6686 -1.3753 6 6 3.1171 -2.8471 -1.6290 7 6 3.4941 -3.6728 -0.5776 8 6 4.1873 -4.8398 -0.8324 9 6 4.5154 -5.1813 -2.1317 10 6 5.2773 -6.4524 -2.4054 11 6 6.7569 -6.1680 -2.3727 12 1 7.1102 -5.1669 -2.1740 13 6 7.6596 -7.1857 -2.5975 14 7 7.2295 -8.4046 -2.8399 15 14 9.4937 -6.8331 -2.5577 16 1 9.8683 -6.3104 -1.2192 17 1 10.2444 -8.0856 -2.8273 18 1 9.8261 -5.8232 -3.5944 19 6 4.1463 -4.3588 -3.1803 20 6 3.4480 -3.1933 -2.9329 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 2.2452 1.6196 -1.0276 24 1 1.4745 2.0647 0.5139 25 1 3.0159 1.1747 0.5138 26 1 1.4384 -2.0853 0.4353 27 1 2.9741 -1.1987 0.5900 28 1 2.1526 -1.0906 -2.1099 29 1 3.2418 -3.4047 0.4377 30 1 4.4771 -5.4845 -0.0158 31 1 5.0329 -7.1935 -1.6445 32 1 5.0028 -6.8361 -3.3879 33 1 7.8645 -9.1205 -2.9985 34 1 4.4037 -4.6286 -4.1939 35 1 3.1604 -2.5512 -3.7523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902232000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = 11.623624 kcal Electronic energy + Delta-G solvation = -14955.360903 eV Core-core repulsion = 12531.148602 eV Total energy + Delta-G solvation = -2424.212300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33566 -37.94009 -35.71529 -34.54523 -31.85634 -31.61637 -28.60009 -28.08111 -26.55666 -24.58610 -23.31831 -21.54386 -19.63200 -18.47435 -18.00175 -16.92554 -16.62984 -15.91061 -15.75465 -15.31844 -14.89536 -14.54277 -14.35780 -14.12029 -13.98906 -13.84687 -13.30009 -13.17822 -12.82730 -12.55617 -12.52367 -12.40294 -11.94314 -11.63992 -11.60964 -11.36428 -10.57553 -10.57306 -10.12699 -9.68960 -8.30075 -7.95954 -6.29812 0.66691 0.88208 1.13432 1.40137 1.43389 1.51675 2.42113 2.80020 3.13186 3.15361 3.79612 4.00720 4.12053 4.23667 4.50380 4.53043 4.66588 4.72898 4.77919 4.79720 4.82807 4.99644 5.04527 5.14230 5.19510 5.37224 5.40217 5.55209 5.64070 5.70014 5.81187 5.88460 6.03399 6.23106 6.25327 6.56730 6.83362 6.95552 7.38488 8.92528 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.048504 B = 0.004427 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.136447 B = 6322.714507 C = 6520.954399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.153 4.153 3 C -0.117 4.117 4 C 0.160 3.840 5 N -0.740 5.740 6 C 0.196 3.804 7 C -0.195 4.195 8 C -0.090 4.090 9 C -0.123 4.123 10 C 0.063 3.937 11 C -0.528 4.528 12 H 0.053 0.947 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.089 4.089 20 C -0.190 4.190 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.404 0.596 29 H 0.133 0.867 30 H 0.110 0.890 31 H -0.003 1.003 32 H -0.002 1.002 33 H 0.265 0.735 34 H 0.112 0.888 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 18.403 5.162 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.173 4.173 4 C 0.037 3.963 5 N -0.372 5.372 6 C 0.094 3.906 7 C -0.217 4.217 8 C -0.108 4.108 9 C -0.125 4.125 10 C 0.026 3.974 11 C -0.566 4.566 12 H 0.071 0.929 13 C -0.196 4.196 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.108 4.108 20 C -0.213 4.213 21 H 0.117 0.883 22 H 0.135 0.865 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.239 0.761 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.099 18.257 5.343 22.545 hybrid contribution 0.953 -0.395 -0.366 1.094 sum -11.147 17.862 4.977 21.635 Atomic orbital electron populations 1.24005 0.94947 1.02976 0.98096 1.21791 0.95722 0.95187 1.02649 1.20857 1.00115 0.93844 1.02527 1.20335 0.98328 0.93990 0.83684 1.44481 1.62477 1.22356 1.07897 1.17711 0.92460 0.87436 0.93007 1.20670 1.06179 0.96340 0.98558 1.20838 0.97422 0.96750 0.95828 1.20153 0.99733 0.98601 0.94042 1.17978 0.93822 0.90543 0.95010 1.21434 0.91913 0.95013 1.48217 0.92913 1.25960 1.04192 0.94730 0.94705 1.70082 1.36331 1.01457 1.49417 0.85496 0.78805 0.77654 0.79075 1.19293 1.20489 1.19258 1.20840 0.97241 0.94301 0.98395 1.20664 1.05968 0.99088 0.95542 0.88311 0.86469 0.91209 0.90519 0.92116 0.92197 0.92326 0.76089 0.84877 0.87215 0.98435 0.98379 0.92632 0.87035 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 13.89 67.79 0.94 -1.16 16 2 C -0.15 -2.30 5.42 -16.48 -0.09 -2.39 16 3 C -0.12 -1.47 10.03 71.23 0.71 -0.76 16 4 C 0.16 3.11 5.07 85.63 0.43 3.55 16 5 N -0.74 -17.04 5.73 -343.12 -1.96 -19.00 16 6 C 0.20 6.08 6.65 38.21 0.25 6.34 16 7 C -0.20 -6.62 9.31 22.40 0.21 -6.41 16 8 C -0.09 -3.73 9.69 22.25 0.22 -3.51 16 9 C -0.12 -5.80 5.07 -19.84 -0.10 -5.90 16 10 C 0.06 3.58 5.10 29.10 0.15 3.73 16 11 C -0.53 -31.46 9.09 25.60 0.23 -31.22 16 12 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 13 C 0.00 0.10 5.46 84.65 0.46 0.57 16 14 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 15 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 C -0.09 -3.67 9.69 22.25 0.22 -3.45 16 20 C -0.19 -6.33 9.90 22.40 0.22 -6.11 16 21 H 0.10 1.32 7.99 -2.91 -0.02 1.29 16 22 H 0.12 1.12 8.04 -2.91 -0.02 1.10 16 23 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16 25 H 0.06 0.82 8.08 -2.38 -0.02 0.80 16 26 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16 27 H 0.06 1.19 7.90 -2.38 -0.02 1.17 16 28 H 0.40 7.91 8.48 -92.71 -0.79 7.12 16 29 H 0.13 3.79 6.73 -2.91 -0.02 3.77 16 30 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 32 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -67.19 301.86 4.48 -62.71 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.27 Total: 13.14 kcal Atomic # 6 Polarization: -50.58 SS G_CDS: 3.86 Total: -46.72 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.68 Total: -76.65 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.19 4.48 -62.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902232000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.338 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds