Wall clock time and date at job start Sun Mar 29 2020 22:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00272 * 2 1 4 4 O 1.45201 * 109.46944 * 135.00086 * 3 2 1 5 5 C 1.34804 * 116.99925 * 180.02562 * 4 3 2 6 6 O 1.21526 * 120.00158 * 359.97438 * 5 4 3 7 7 C 1.47288 * 120.00213 * 180.02562 * 5 4 3 8 8 C 1.39296 * 120.28603 * 354.83939 * 7 5 4 9 9 C 1.38205 * 120.08627 * 180.27692 * 8 7 5 10 10 C 1.38842 * 120.68093 * 359.73704 * 9 8 7 11 11 C 1.37598 * 120.58249 * 0.02562 * 10 9 8 12 12 C 1.40703 * 119.88779 * 0.02562 * 11 10 9 13 13 C 1.40861 * 120.33435 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00819 * 145.73608 * 13 12 11 15 15 C 1.40300 * 119.99625 * 325.73972 * 13 12 11 16 16 N 1.30615 * 120.00178 * 339.67941 * 15 13 12 17 17 Si 1.86801 * 120.00058 * 159.68932 * 15 13 12 18 18 H 1.48493 * 109.47173 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46636 * 299.99423 * 17 15 13 20 20 H 1.48494 * 109.47212 * 59.99337 * 17 15 13 21 21 H 1.08001 * 119.99828 * 359.97438 * 1 2 3 22 22 H 1.08003 * 120.00084 * 180.02562 * 1 2 3 23 23 H 1.08007 * 119.99442 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.46912 * 15.00492 * 3 2 1 25 25 H 1.09000 * 109.47278 * 255.00004 * 3 2 1 26 26 H 1.08000 * 119.95653 * 0.02562 * 8 7 5 27 27 H 1.07997 * 119.65882 * 179.75950 * 9 8 7 28 28 H 1.07994 * 119.70815 * 180.02562 * 10 9 8 29 29 H 1.07997 * 120.05357 * 180.02562 * 11 10 9 30 30 H 0.97001 * 119.99911 * 355.29856 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1438 1.2401 0.9680 5 6 3.9200 2.3352 1.0933 6 8 3.7000 3.3170 0.4118 7 6 5.0353 2.3413 2.0553 8 6 5.2283 1.2615 2.9139 9 6 6.2728 1.2741 3.8189 10 6 7.1430 2.3542 3.8815 11 6 6.9810 3.4332 3.0431 12 6 5.9251 3.4463 2.1132 13 6 5.7502 4.5463 1.2509 14 1 5.3787 4.3930 0.2485 15 6 6.0588 5.8411 1.6942 16 7 6.1210 6.0958 2.9738 17 14 6.3804 7.2010 0.4545 18 1 6.6814 8.4650 1.1733 19 1 7.5372 6.8289 -0.3992 20 1 5.1780 7.3899 -0.3961 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 1.3856 2.1160 0.2661 25 1 2.4756 1.4867 -0.9926 26 1 4.5585 0.4152 2.8751 27 1 6.4137 0.4350 4.4840 28 1 7.9541 2.3473 4.5944 29 1 7.6631 4.2686 3.0989 30 1 5.8875 5.4084 3.6170 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916608708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:26 Heat of formation + Delta-G solvation = -57.483214 kcal Electronic energy + Delta-G solvation = -15522.563934 eV Core-core repulsion = 12861.803179 eV Total energy + Delta-G solvation = -2660.760754 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.44356 -37.54328 -35.64313 -34.08064 -33.61468 -30.20865 -29.47079 -26.57168 -25.23425 -22.66286 -21.08028 -20.02647 -19.73912 -18.03205 -16.68650 -16.12980 -15.61460 -14.86041 -14.49245 -14.19340 -13.82145 -13.50751 -12.90047 -12.71858 -12.37594 -12.06311 -11.85404 -11.21804 -11.05147 -10.99189 -10.76421 -10.43089 -10.26953 -10.16778 -9.76219 -9.42014 -9.15465 -8.88243 -7.87783 -7.69990 -7.28517 -4.59366 2.07589 2.10388 2.70136 3.14972 3.25676 3.35548 3.68144 3.78099 3.96835 4.52768 4.95147 5.14073 5.34639 5.55247 5.66142 5.81248 5.97900 6.02417 6.17999 6.42579 6.50372 6.66886 6.71108 6.90644 7.16629 7.30581 7.45374 7.54360 7.70048 7.79110 8.03676 8.11912 8.59402 8.71373 9.00942 9.92438 Molecular weight = 232.09amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.008526 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.883031 B = 3283.219344 C = 4361.118209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.093 3.907 4 O -0.367 6.367 5 C 0.503 3.497 6 O -0.515 6.515 7 C -0.255 4.255 8 C -0.023 4.023 9 C -0.261 4.261 10 C -0.070 4.070 11 C -0.201 4.201 12 C 0.121 3.879 13 C -0.466 4.466 14 H 0.104 0.896 15 C 0.032 3.968 16 N -0.784 5.784 17 Si 1.071 2.929 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.272 1.272 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.117 0.883 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -6.063 -2.895 7.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C 0.019 3.981 4 O -0.287 6.287 5 C 0.354 3.646 6 O -0.406 6.406 7 C -0.258 4.258 8 C -0.041 4.041 9 C -0.280 4.280 10 C -0.089 4.089 11 C -0.220 4.220 12 C 0.117 3.883 13 C -0.492 4.492 14 H 0.122 0.878 15 C -0.191 4.191 16 N -0.407 5.407 17 Si 0.893 3.107 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.197 1.197 21 H 0.116 0.884 22 H 0.122 0.878 23 H 0.135 0.865 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.951 -4.157 -3.191 6.563 hybrid contribution -0.553 -1.732 0.180 1.827 sum -4.504 -5.889 -3.011 8.002 Atomic orbital electron populations 1.23814 0.95489 1.02185 1.00677 1.22788 0.95637 0.98153 0.99726 1.21800 0.88037 0.95684 0.92569 1.86600 1.41801 1.42372 1.57887 1.21340 0.81290 0.79701 0.82292 1.90737 1.70615 1.33992 1.45255 1.18681 0.99423 1.02041 1.05608 1.20915 0.95099 0.95414 0.92709 1.20332 1.01535 1.00439 1.05725 1.20807 0.97298 0.93845 0.96934 1.21195 0.99930 0.99342 1.01487 1.17468 0.88768 0.91683 0.90376 1.21199 1.33849 0.92197 1.01926 0.87811 1.27325 0.91420 1.01279 0.99042 1.70388 1.28371 1.39094 1.02854 0.83550 0.78120 0.74487 0.74498 1.19744 1.19790 1.19727 0.88363 0.87800 0.86489 0.91383 0.90923 0.87773 0.88548 0.88597 0.87301 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.31 29.01 0.42 -1.62 16 2 C -0.15 -1.92 9.90 -36.03 -0.36 -2.28 16 3 C 0.09 1.57 5.89 36.00 0.21 1.78 16 4 O -0.37 -7.66 9.47 -40.78 -0.39 -8.04 16 5 C 0.50 12.34 7.85 34.41 0.27 12.61 16 6 O -0.52 -13.66 13.38 -19.28 -0.26 -13.92 16 7 C -0.25 -6.44 5.92 -104.39 -0.62 -7.06 16 8 C -0.02 -0.52 9.60 -39.20 -0.38 -0.89 16 9 C -0.26 -5.57 10.03 -39.37 -0.39 -5.97 16 10 C -0.07 -1.54 10.01 -39.59 -0.40 -1.93 16 11 C -0.20 -4.95 7.90 -38.88 -0.31 -5.25 16 12 C 0.12 3.23 5.16 -106.54 -0.55 2.68 16 13 C -0.47 -12.66 7.62 -37.81 -0.29 -12.94 16 14 H 0.10 2.92 5.99 -52.49 -0.31 2.61 16 15 C 0.03 0.82 5.01 -17.29 -0.09 0.73 16 16 N -0.78 -20.65 12.60 55.57 0.70 -19.95 16 17 Si 1.07 21.99 29.98 -169.99 -5.10 16.89 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H 0.10 1.03 7.90 -52.49 -0.41 0.62 16 22 H 0.10 0.91 8.06 -52.48 -0.42 0.49 16 23 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 24 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.10 2.10 7.61 -52.49 -0.40 1.70 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.11 2.70 6.99 -52.49 -0.37 2.33 16 30 H 0.30 8.08 6.62 -40.82 -0.27 7.81 16 LS Contribution 269.29 15.07 4.06 4.06 Total: -1.00 -28.79 269.29 -6.54 -35.33 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.08 Total: 5.77 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.48 Total: -20.14 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.70 Total: -19.95 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.64 Total: -21.97 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.10 Total: 16.89 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.79 -6.54 -35.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916608708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.155 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds