Wall clock time and date at job start Sun Mar 29 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47272 * 240.00361 * 3 2 1 5 5 H 1.48501 * 109.47516 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47193 * 120.00579 * 3 2 1 7 7 C 1.38781 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99931 * 180.02562 * 7 2 1 9 9 N 1.36897 * 120.00132 * 0.26939 * 7 2 1 10 10 C 1.38880 * 119.99951 * 174.59180 * 9 7 2 11 11 C 1.38202 * 119.25919 * 5.76188 * 10 9 7 12 12 C 1.40423 * 118.52802 * 179.78102 * 11 10 9 13 13 C 1.40286 * 122.10247 * 180.20947 * 12 11 10 14 14 C 1.36433 * 119.46819 * 180.27647 * 13 12 11 15 15 F 1.35097 * 119.52528 * 179.97438 * 14 13 12 16 16 C 1.39623 * 120.94893 * 0.02810 * 14 13 12 17 17 C 1.36127 * 121.08810 * 359.94723 * 16 14 13 18 18 C 1.40410 * 119.59614 * 0.04975 * 17 16 14 19 19 C 1.40376 * 121.88547 * 179.97438 * 18 17 16 20 20 N 1.31176 * 120.18885 * 180.02562 * 19 18 17 21 21 H 0.96997 * 120.00753 * 359.97438 * 1 2 3 22 22 H 0.97003 * 119.99801 * 354.59842 * 9 7 2 23 23 H 1.08005 * 120.73251 * 0.02876 * 11 10 9 24 24 H 1.08001 * 120.27189 * 0.30465 * 13 12 11 25 25 H 1.08007 * 119.45820 * 179.97438 * 16 14 13 26 26 H 1.08009 * 120.20213 * 180.02562 * 17 16 14 27 27 H 1.08002 * 119.90363 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2849 2.7465 0.0006 6 1 3.1036 1.6963 1.2124 7 6 2.0098 -1.2019 -0.0005 8 1 3.0898 -1.2019 -0.0001 9 7 1.3253 -2.3874 -0.0066 10 6 2.0156 -3.5872 -0.1205 11 6 3.3975 -3.5754 -0.1060 12 6 4.0797 -4.7977 -0.2176 13 6 5.4805 -4.8732 -0.2069 14 6 6.0880 -6.0892 -0.3246 15 9 7.4369 -6.1633 -0.3150 16 6 5.3356 -7.2580 -0.4558 17 6 3.9749 -7.2203 -0.4693 18 6 3.3142 -5.9871 -0.3505 19 6 1.9137 -5.8924 -0.3592 20 7 1.3309 -4.7226 -0.2465 21 1 -0.4851 0.8400 0.0004 22 1 0.3582 -2.3895 0.0685 23 1 3.9405 -2.6471 -0.0071 24 1 6.0734 -3.9762 -0.1060 25 1 5.8415 -8.2079 -0.5476 26 1 3.4071 -8.1334 -0.5711 27 1 1.3142 -6.7853 -0.4590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181668.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:23 Heat of formation + Delta-G solvation = -8.914852 kcal Electronic energy + Delta-G solvation = -14916.873500 eV Core-core repulsion = 12167.051274 eV Total energy + Delta-G solvation = -2749.822226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.88344 -41.35131 -38.53754 -36.58336 -33.97850 -33.11858 -31.25726 -29.33073 -26.98776 -24.74638 -23.57357 -23.14375 -19.95350 -19.48394 -18.06336 -17.93458 -17.25620 -16.61263 -16.56003 -15.86702 -15.56012 -15.20338 -15.02603 -14.58789 -14.07316 -13.74510 -13.53317 -13.37933 -13.27391 -12.76911 -12.42517 -12.16845 -11.87728 -11.75279 -10.95463 -10.39679 -10.27228 -9.49571 -8.62410 -8.39270 -5.86750 -0.34607 0.21388 1.19389 1.38513 1.45400 1.50237 2.17008 2.18912 2.93023 3.01744 3.36819 3.46571 3.75508 4.09576 4.13291 4.16353 4.34875 4.45589 4.89986 4.96749 5.06914 5.15722 5.29048 5.31290 5.39797 5.53832 5.74824 5.99803 6.14502 6.58592 6.98835 7.31429 7.69413 8.55194 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.006539 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.387069 B = 4281.211544 C = 5070.538349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.005 2.995 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.319 4.319 8 H 0.108 0.892 9 N -0.549 5.549 10 C 0.341 3.659 11 C -0.321 4.321 12 C 0.050 3.950 13 C -0.210 4.210 14 C 0.132 3.868 15 F -0.148 7.148 16 C -0.215 4.215 17 C -0.002 4.002 18 C -0.225 4.225 19 C 0.207 3.793 20 N -0.570 5.570 21 H 0.281 0.719 22 H 0.393 0.607 23 H 0.113 0.887 24 H 0.127 0.873 25 H 0.160 0.840 26 H 0.180 0.820 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -11.441 -0.844 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.222 4.222 3 Si 0.827 3.173 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.449 4.449 8 H 0.125 0.875 9 N -0.152 5.152 10 C 0.107 3.893 11 C -0.351 4.351 12 C 0.045 3.955 13 C -0.230 4.230 14 C 0.112 3.888 15 F -0.126 7.126 16 C -0.235 4.235 17 C -0.022 4.022 18 C -0.231 4.231 19 C 0.029 3.971 20 N -0.284 5.284 21 H 0.090 0.910 22 H 0.227 0.773 23 H 0.131 0.869 24 H 0.145 0.855 25 H 0.177 0.823 26 H 0.198 0.802 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.234 -10.663 -0.809 12.378 hybrid contribution 0.884 1.309 0.114 1.584 sum 7.118 -9.354 -0.695 11.775 Atomic orbital electron populations 1.69801 1.07529 1.29962 1.48081 1.26336 0.96592 1.03245 0.96067 0.84793 0.77602 0.75385 0.79534 1.18927 1.20011 1.18776 1.20052 0.93525 0.82791 1.48538 0.87472 1.40919 1.08596 1.02188 1.63489 1.18334 0.89166 0.85863 0.95904 1.20726 0.92690 0.97786 1.23943 1.17664 0.92609 0.92798 0.92399 1.20709 0.94019 0.97503 1.10803 1.17688 0.76366 0.95034 0.99751 1.91454 1.30086 1.97319 1.93784 1.20858 0.94831 0.97305 1.10490 1.21129 0.93425 0.96692 0.90936 1.18997 0.95334 0.94407 1.14344 1.23482 0.91155 0.94393 0.88087 1.66808 1.42231 0.98826 1.20560 0.90952 0.77286 0.86934 0.85517 0.82285 0.80247 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.84 13.06 21.64 0.28 -49.56 15 2 C -0.02 -1.10 5.50 84.86 0.47 -0.64 15 3 Si 1.00 40.47 29.55 68.60 2.03 42.50 15 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 5 H -0.28 -10.76 7.11 99.48 0.71 -10.05 15 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 15 7 C -0.32 -16.98 9.52 84.03 0.80 -16.18 15 8 H 0.11 5.49 5.64 -2.91 -0.02 5.48 15 9 N -0.55 -29.00 5.43 -189.52 -1.03 -30.03 15 10 C 0.34 16.48 7.59 132.65 1.01 17.48 15 11 C -0.32 -14.66 9.12 22.79 0.21 -14.45 15 12 C 0.05 1.96 5.74 -21.30 -0.12 1.84 15 13 C -0.21 -7.30 9.77 22.35 0.22 -7.08 15 14 C 0.13 3.93 7.24 22.18 0.16 4.09 15 15 F -0.15 -4.30 17.24 44.97 0.78 -3.53 15 16 C -0.22 -5.09 9.92 22.11 0.22 -4.87 15 17 C 0.00 -0.05 9.79 22.31 0.22 0.17 15 18 C -0.23 -7.23 5.74 -21.28 -0.12 -7.35 15 19 C 0.21 6.64 11.02 85.31 0.94 7.58 15 20 N -0.57 -24.23 10.32 -192.20 -1.98 -26.21 15 21 H 0.28 14.28 8.31 -92.71 -0.77 13.51 15 22 H 0.39 21.53 8.03 -92.71 -0.74 20.79 15 23 H 0.11 5.28 5.92 -2.91 -0.02 5.27 15 24 H 0.13 4.28 8.06 -2.91 -0.02 4.26 15 25 H 0.16 2.69 8.06 -2.91 -0.02 2.66 15 26 H 0.18 2.27 8.06 -2.91 -0.02 2.24 15 27 H 0.20 4.20 8.06 -2.91 -0.02 4.18 15 Total: -1.00 -61.60 248.02 4.54 -57.06 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.48 Total: 29.19 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 3.99 Total: -19.41 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -2.73 Total: -105.80 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -61.60 4.54 -57.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181668.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.140 kcal (2) G-P(sol) polarization free energy of solvation -61.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds