Wall clock time and date at job start Sun Mar 29 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48504 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47204 * 299.99817 * 3 2 1 6 6 H 1.48502 * 109.46957 * 60.00374 * 3 2 1 7 7 C 1.37879 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99470 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00678 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47511 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.42906 * 113.99495 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47490 * 30.00028 * 12 11 10 14 14 C 1.53006 * 109.46748 * 149.99936 * 12 11 10 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 12 17 17 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 18 18 C 1.52997 * 109.47139 * 269.99769 * 12 11 10 19 19 H 1.09000 * 109.47140 * 300.00473 * 18 12 11 20 20 Cl 1.80299 * 109.46982 * 60.00104 * 18 12 11 21 21 H 0.96997 * 119.99712 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46938 * 59.99333 * 9 7 2 23 23 H 1.09005 * 109.46544 * 300.00213 * 9 7 2 24 24 H 1.09007 * 109.46923 * 59.99874 * 10 9 7 25 25 H 1.08994 * 109.47079 * 300.00128 * 10 9 7 26 26 H 1.08993 * 109.46955 * 299.99993 * 14 12 11 27 27 H 1.09000 * 109.47050 * 59.99822 * 14 12 11 28 28 H 1.09000 * 109.47160 * 60.00369 * 15 14 12 29 29 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 30 30 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 31 31 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 32 32 H 1.08992 * 109.47534 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47134 * 59.99508 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5305 -4.8997 0.0011 12 6 2.3705 -6.0558 0.0018 13 1 3.3041 -5.8264 0.5155 14 6 1.6595 -7.2023 0.7236 15 6 2.5586 -8.4402 0.7237 16 6 2.8579 -8.8534 -0.7187 17 6 3.5689 -7.7070 -1.4405 18 6 2.6703 -6.4691 -1.4405 19 1 1.7367 -6.6985 -1.9542 20 17 3.5081 -5.1181 -2.2911 21 1 -0.4849 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8906 25 1 2.8718 -3.6045 -0.8894 26 1 1.4459 -6.9078 1.7511 27 1 0.7259 -7.4317 0.2099 28 1 3.4923 -8.2111 1.2373 29 1 2.0519 -9.2571 1.2376 30 1 1.9242 -9.0825 -1.2322 31 1 3.4981 -9.7356 -0.7185 32 1 3.7817 -8.0011 -2.4681 33 1 4.5025 -7.4778 -0.9269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:58 Heat of formation + Delta-G solvation = -89.408854 kcal Electronic energy + Delta-G solvation = -14586.359202 eV Core-core repulsion = 12057.614293 eV Total energy + Delta-G solvation = -2528.744909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.097 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -39.06358 -36.25076 -35.47682 -33.13428 -30.74006 -30.33330 -28.75388 -24.52533 -22.68970 -22.19605 -20.89169 -19.87378 -16.76710 -15.90534 -15.50413 -15.13965 -14.64048 -14.42447 -14.17487 -13.24958 -13.16980 -12.68033 -12.52929 -12.17188 -11.71434 -11.32337 -11.19440 -11.08405 -10.97274 -10.72508 -10.69214 -10.44918 -10.34776 -10.12918 -9.99869 -9.34057 -9.11208 -8.52461 -8.22202 -5.97878 -4.00431 2.41170 3.33399 3.40184 3.44712 4.08377 4.48995 4.51051 4.70760 4.80454 4.93715 5.15890 5.16935 5.26193 5.32564 5.38383 5.60760 5.70945 5.80897 5.89636 5.91791 5.93995 6.14510 6.22447 6.39514 6.56906 7.02726 7.59473 7.87628 7.88096 8.16820 8.43822 9.06415 9.62785 11.14044 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.044314 B = 0.005886 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.696753 B = 4755.562325 C = 5143.150234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.027 3.973 10 C 0.051 3.949 11 O -0.379 6.379 12 C 0.087 3.913 13 H 0.064 0.936 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.023 4.023 19 H 0.102 0.898 20 Cl -0.172 7.172 21 H 0.260 0.740 22 H 0.023 0.977 23 H 0.020 0.980 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -17.739 -1.030 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.024 4.024 11 O -0.299 6.299 12 C 0.027 3.973 13 H 0.082 0.918 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.067 4.067 19 H 0.120 0.880 20 Cl -0.145 7.145 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.942 -17.512 -1.098 18.525 hybrid contribution 0.717 1.091 -0.103 1.310 sum 6.659 -16.421 -1.201 17.760 Atomic orbital electron populations 1.69996 1.06048 1.26515 1.50591 1.24986 0.94854 0.99216 0.95260 0.86499 0.80072 0.83622 0.77602 1.19708 1.20935 1.20953 1.21096 0.93023 0.90566 1.50986 0.92579 1.19039 0.94233 0.89586 0.98126 1.23353 0.96810 0.82646 0.99580 1.87962 1.33657 1.13648 1.94600 1.22155 0.95000 0.88299 0.91804 0.91764 1.21609 0.99116 0.93171 1.01469 1.21569 1.00106 0.97447 0.96650 1.21575 1.00858 0.97404 0.95877 1.21883 0.98839 0.93394 1.01891 1.24871 0.97654 0.87757 0.96385 0.87961 1.98719 1.81728 1.53182 1.80880 0.93001 0.95852 0.96135 0.95260 0.92028 0.90446 0.90906 0.91622 0.91207 0.91486 0.91207 0.90721 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.76 5.34 -27.88 -0.15 0.61 16 10 C 0.05 1.17 5.44 37.16 0.20 1.38 16 11 O -0.38 -7.75 9.93 -35.23 -0.35 -8.10 16 12 C 0.09 1.31 2.33 -26.73 -0.06 1.25 16 13 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 14 C -0.12 -1.39 5.57 -26.73 -0.15 -1.54 16 15 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 16 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 17 C -0.12 -1.23 5.33 -26.75 -0.14 -1.37 16 18 C -0.02 -0.31 2.92 -26.75 -0.08 -0.38 16 19 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 20 Cl -0.17 -2.83 25.30 -51.86 -1.31 -4.14 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.65 8.08 -51.92 -0.42 0.23 16 25 H 0.06 1.38 4.90 -51.93 -0.25 1.13 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -31.53 279.11 -8.12 -39.64 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -5.27 Total: -5.50 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.11 Total: -16.39 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.83 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.35 Total: -8.10 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -1.31 Total: -4.14 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.53 -8.12 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.765 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds