Wall clock time and date at job start Sun Mar 29 2020 22:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48504 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47204 * 299.99817 * 3 2 1 6 6 H 1.48502 * 109.46957 * 60.00374 * 3 2 1 7 7 C 1.37879 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99470 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00678 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47511 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.42906 * 113.99495 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47490 * 30.00028 * 12 11 10 14 14 C 1.53006 * 109.46748 * 149.99936 * 12 11 10 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47592 * 300.00035 * 15 14 12 17 17 C 1.52996 * 109.47165 * 60.00300 * 16 15 14 18 18 C 1.52997 * 109.47139 * 269.99769 * 12 11 10 19 19 H 1.09000 * 109.47140 * 300.00473 * 18 12 11 20 20 Cl 1.80299 * 109.46982 * 60.00104 * 18 12 11 21 21 H 0.96997 * 119.99712 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46938 * 59.99333 * 9 7 2 23 23 H 1.09005 * 109.46544 * 300.00213 * 9 7 2 24 24 H 1.09007 * 109.46923 * 59.99874 * 10 9 7 25 25 H 1.08994 * 109.47079 * 300.00128 * 10 9 7 26 26 H 1.08993 * 109.46955 * 299.99993 * 14 12 11 27 27 H 1.09000 * 109.47050 * 59.99822 * 14 12 11 28 28 H 1.09000 * 109.47160 * 60.00369 * 15 14 12 29 29 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 30 30 H 1.09000 * 109.47140 * 300.00346 * 16 15 14 31 31 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 32 32 H 1.08992 * 109.47534 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47134 * 59.99508 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5305 -4.8997 0.0011 12 6 2.3705 -6.0558 0.0018 13 1 3.3041 -5.8264 0.5155 14 6 1.6595 -7.2023 0.7236 15 6 2.5586 -8.4402 0.7237 16 6 2.8579 -8.8534 -0.7187 17 6 3.5689 -7.7070 -1.4405 18 6 2.6703 -6.4691 -1.4405 19 1 1.7367 -6.6985 -1.9542 20 17 3.5081 -5.1181 -2.2911 21 1 -0.4849 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8906 25 1 2.8718 -3.6045 -0.8894 26 1 1.4459 -6.9078 1.7511 27 1 0.7259 -7.4317 0.2099 28 1 3.4923 -8.2111 1.2373 29 1 2.0519 -9.2571 1.2376 30 1 1.9242 -9.0825 -1.2322 31 1 3.4981 -9.7356 -0.7185 32 1 3.7817 -8.0011 -2.4681 33 1 4.5025 -7.4778 -0.9269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:57 Heat of formation + Delta-G solvation = -108.173181 kcal Electronic energy + Delta-G solvation = -14587.172884 eV Core-core repulsion = 12057.614293 eV Total energy + Delta-G solvation = -2529.558591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24287 -37.62916 -36.65586 -35.30660 -32.27430 -31.50779 -30.15593 -26.61842 -23.65345 -23.23687 -22.84746 -20.86385 -18.74478 -17.44053 -16.95563 -16.64293 -16.35789 -15.42724 -15.36186 -14.66743 -14.46603 -14.09361 -13.85050 -13.64186 -13.16403 -12.95464 -12.69271 -12.49454 -12.41637 -12.28164 -11.92494 -11.84472 -11.52897 -11.40816 -11.33555 -11.30854 -11.06386 -10.63598 -9.94401 -8.24366 -6.37043 1.27450 1.39035 1.40494 1.54031 2.36403 2.79795 3.09278 3.49528 3.77381 3.89918 4.05550 4.15980 4.23276 4.32695 4.38961 4.46138 4.62889 4.79690 4.84170 4.94395 5.01088 5.10111 5.13698 5.21440 5.28594 5.36687 5.45431 5.60153 5.72974 6.12307 6.42726 6.78477 7.32398 8.89140 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.044314 B = 0.005886 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.696753 B = 4755.562325 C = 5143.150234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.070 3.930 11 O -0.402 6.402 12 C 0.076 3.924 13 H 0.066 0.934 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.018 4.018 19 H 0.101 0.899 20 Cl -0.201 7.201 21 H 0.266 0.734 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 -18.856 -0.908 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.005 4.005 10 C -0.006 4.006 11 O -0.321 6.321 12 C 0.018 3.982 13 H 0.084 0.916 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.062 4.062 19 H 0.119 0.881 20 Cl -0.175 7.175 21 H 0.075 0.925 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.447 -18.659 -0.973 20.114 hybrid contribution 0.181 1.342 -0.121 1.359 sum 7.628 -17.317 -1.094 18.955 Atomic orbital electron populations 1.70132 1.07982 1.27982 1.51077 1.26026 0.95820 1.03559 0.94291 0.85284 0.78969 0.78084 0.78013 1.18432 1.20127 1.19942 1.21467 0.93528 0.91557 1.51510 0.91889 1.18893 0.94533 0.92032 0.95079 1.22912 0.95111 0.82514 1.00017 1.87904 1.35096 1.14221 1.94922 1.22560 0.94854 0.87262 0.93504 0.91636 1.21657 0.99596 0.93321 1.00517 1.21573 0.99759 0.96204 0.97601 1.21598 1.01431 0.97293 0.94931 1.21903 0.98255 0.92061 1.03139 1.25047 0.98397 0.88054 0.94694 0.88069 1.98714 1.82196 1.55137 1.81403 0.92533 0.99054 0.99092 0.94846 0.91410 0.91027 0.91043 0.91073 0.89061 0.91016 0.88603 0.89525 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.76 13.29 21.45 0.28 -58.47 16 2 C 0.00 0.06 5.46 84.66 0.46 0.53 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -32.51 9.11 25.60 0.23 -32.27 16 8 H 0.06 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.85 5.34 29.85 0.16 2.01 16 10 C 0.07 3.28 5.44 71.98 0.39 3.68 16 11 O -0.40 -16.76 9.93 -148.98 -1.48 -18.24 16 12 C 0.08 2.27 2.33 30.60 0.07 2.34 16 13 H 0.07 1.93 7.79 -2.39 -0.02 1.91 16 14 C -0.11 -2.56 5.57 30.60 0.17 -2.39 16 15 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 16 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 17 C -0.12 -2.04 5.33 30.58 0.16 -1.87 16 18 C -0.02 -0.47 2.92 30.58 0.09 -0.39 16 19 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 20 Cl -0.20 -6.57 25.30 -2.72 -0.07 -6.64 16 21 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 24 H 0.03 1.51 8.08 -2.38 -0.02 1.49 16 25 H 0.07 3.10 4.90 -2.39 -0.01 3.08 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -69.31 279.11 3.93 -65.38 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.06 Total: 1.74 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 2.10 Total: -31.19 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.28 Total: -58.47 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.48 Total: -18.24 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -6.57 SS G_CDS: -0.07 Total: -6.64 kcal Total: -69.31 3.93 -65.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.790 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds