Wall clock time and date at job start Sun Mar 29 2020 21:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 C 1.50705 * 109.46952 * 180.02562 * 3 2 1 5 5 C 1.32104 * 120.00123 * 125.00710 * 4 3 2 6 6 N 1.38805 * 120.00191 * 179.97438 * 5 4 3 7 7 C 1.38789 * 119.99880 * 179.97438 * 6 5 4 8 8 C 1.39613 * 119.84943 * 359.72777 * 7 6 5 9 9 C 1.36301 * 120.15818 * 179.71756 * 8 7 6 10 10 C 1.40906 * 119.83739 * 0.57529 * 9 8 7 11 11 C 1.41098 * 120.15033 * 179.67903 * 10 9 8 12 12 H 1.07995 * 120.00131 * 204.64692 * 11 10 9 13 13 C 1.39835 * 120.00254 * 24.64128 * 11 10 9 14 14 N 1.30927 * 119.99748 * 17.98522 * 13 11 10 15 15 Si 1.86805 * 120.00436 * 197.98209 * 13 11 10 16 16 H 1.48500 * 109.46857 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46961 * 120.00105 * 15 13 11 18 18 H 1.48500 * 109.47145 * 240.00210 * 15 13 11 19 19 C 1.40904 * 119.69697 * 359.69937 * 10 9 8 20 20 C 1.36296 * 119.84222 * 359.97438 * 19 10 9 21 21 H 1.09004 * 109.47091 * 59.99532 * 1 2 3 22 22 H 1.09001 * 109.47423 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46728 * 299.99834 * 1 2 3 24 24 H 1.08994 * 109.47218 * 120.00526 * 2 1 3 25 25 H 1.09004 * 109.46579 * 240.00616 * 2 1 3 26 26 H 1.08994 * 109.47517 * 300.00343 * 3 2 1 27 27 H 1.09004 * 109.46904 * 60.00815 * 3 2 1 28 28 H 1.08000 * 119.99764 * 304.99940 * 4 3 2 29 29 H 1.08004 * 119.99647 * 359.97438 * 5 4 3 30 30 H 0.97003 * 120.00046 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.91660 * 359.97438 * 8 7 6 32 32 H 1.08002 * 120.08027 * 180.27810 * 9 8 7 33 33 H 0.97002 * 119.99533 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.07969 * 179.97438 * 19 10 9 35 35 H 1.08005 * 119.92331 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2072 2.0989 -0.9379 6 7 5.5953 2.0993 -0.9382 7 6 6.2888 2.7885 -1.9232 8 6 5.5871 3.4756 -2.9155 9 6 6.2618 4.1593 -3.8825 10 6 7.6708 4.1615 -3.8861 11 6 8.3759 4.8614 -4.8880 12 1 9.3820 4.5662 -5.1467 13 6 7.7720 5.9374 -5.5460 14 7 6.7246 6.5215 -5.0207 15 14 8.4597 6.5415 -7.1744 16 1 9.6374 5.7186 -7.5501 17 1 7.4179 6.4233 -8.2261 18 1 8.8701 7.9625 -7.0418 19 6 8.3725 3.4611 -2.8849 20 6 7.6850 2.7871 -1.9201 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 4.0873 0.9058 0.7652 29 1 3.6668 2.6352 -1.7039 30 1 6.0806 1.6172 -0.2504 31 1 4.5071 3.4688 -2.9144 32 1 5.7177 4.6942 -4.6470 33 1 6.3059 7.2681 -5.4770 34 1 9.4525 3.4582 -2.8819 35 1 8.2215 2.2495 -1.1522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210059732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:45 Heat of formation + Delta-G solvation = 3.450785 kcal Electronic energy + Delta-G solvation = -14866.145983 eV Core-core repulsion = 12441.579282 eV Total energy + Delta-G solvation = -2424.566701 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09805 -37.81349 -36.13754 -34.92395 -32.19556 -31.48481 -30.19314 -27.25760 -25.67765 -23.51770 -22.58971 -21.74896 -20.62634 -19.25107 -18.00284 -17.24774 -16.85211 -15.86655 -15.54823 -15.01986 -14.70819 -14.41788 -14.27636 -14.12815 -13.79854 -13.45134 -13.18035 -12.95868 -12.77471 -12.42312 -12.39973 -12.12970 -11.94080 -11.83392 -11.61244 -11.43995 -11.22433 -10.93595 -9.59056 -9.50224 -8.61180 -8.04298 -6.10116 0.87233 1.09852 1.39806 1.43786 1.54972 1.88135 2.24396 2.78465 2.81099 3.77586 3.99460 4.24299 4.30398 4.39626 4.42255 4.48558 4.77927 4.93525 4.95054 4.98693 5.03615 5.13989 5.16710 5.23634 5.34258 5.38504 5.45790 5.55322 5.64751 5.76927 5.85191 5.93921 6.10988 6.31875 6.62002 6.81615 6.99531 7.04977 7.15323 8.39880 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.042215 B = 0.004432 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.109841 B = 6315.485851 C = 6816.499648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.061 4.061 4 C -0.284 4.284 5 C 0.101 3.899 6 N -0.668 5.668 7 C 0.061 3.939 8 C -0.157 4.157 9 C -0.152 4.152 10 C 0.050 3.950 11 C -0.500 4.500 12 H 0.073 0.927 13 C 0.033 3.967 14 N -0.834 5.834 15 Si 0.980 3.020 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.268 1.268 19 C -0.205 4.205 20 C -0.142 4.142 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.404 0.596 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.285 0.715 34 H 0.103 0.897 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -7.504 6.090 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.099 4.099 4 C -0.311 4.311 5 C -0.018 4.018 6 N -0.287 5.287 7 C -0.035 4.035 8 C -0.178 4.178 9 C -0.172 4.172 10 C 0.047 3.953 11 C -0.530 4.530 12 H 0.091 0.909 13 C -0.181 4.181 14 N -0.461 5.461 15 Si 0.801 3.199 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.193 1.193 19 C -0.225 4.225 20 C -0.163 4.163 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.240 0.760 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.645 -7.218 5.931 12.072 hybrid contribution 0.584 0.374 -0.463 0.834 sum -7.062 -6.844 5.468 11.252 Atomic orbital electron populations 1.21790 0.95214 1.01951 1.01948 1.21472 0.96015 0.96323 1.01702 1.20271 0.90992 0.97072 1.01546 1.22269 0.96436 1.09763 1.02622 1.21115 0.83311 0.98459 0.98893 1.41655 1.04041 1.53744 1.29295 1.17498 0.91195 1.01344 0.93512 1.20382 0.98403 1.01962 0.97056 1.20885 0.94673 1.01748 0.99895 1.17918 0.92545 0.92385 0.92435 1.19691 1.01638 1.13326 1.18357 0.90901 1.26689 0.94593 0.95298 1.01493 1.69924 1.20044 1.18379 1.37735 0.85194 0.79242 0.78330 0.77120 1.18286 1.19039 1.19252 1.20775 0.98365 1.06072 0.97330 1.20172 0.91799 1.03613 1.00687 0.92937 0.92185 0.92266 0.91889 0.92941 0.92626 0.91465 0.87551 0.85710 0.76029 0.87221 0.87873 0.90423 0.87891 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.27 5.92 30.59 0.18 -2.09 16 3 C -0.06 -1.35 5.66 29.85 0.17 -1.18 16 4 C -0.28 -7.45 9.32 24.72 0.23 -7.22 16 5 C 0.10 3.18 9.67 82.62 0.80 3.98 16 6 N -0.67 -22.92 5.50 -187.18 -1.03 -23.95 16 7 C 0.06 2.62 6.64 38.71 0.26 2.87 16 8 C -0.16 -7.34 9.24 22.15 0.20 -7.14 16 9 C -0.15 -8.09 8.63 22.47 0.19 -7.90 16 10 C 0.05 2.73 5.57 -21.27 -0.12 2.61 16 11 C -0.50 -27.39 9.03 23.36 0.21 -27.18 16 12 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 13 C 0.03 1.67 5.13 85.21 0.44 2.11 16 14 N -0.83 -44.42 10.96 21.81 0.24 -44.18 16 15 Si 0.98 38.94 29.60 68.60 2.03 40.97 16 16 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 19 C -0.21 -10.06 9.74 22.47 0.22 -9.84 16 20 C -0.14 -6.10 9.82 22.15 0.22 -5.89 16 21 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.09 8.14 -2.38 -0.02 1.08 16 26 H 0.05 1.26 7.81 -2.39 -0.02 1.24 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.11 2.62 8.04 -2.91 -0.02 2.60 16 29 H 0.13 4.04 5.72 -2.91 -0.02 4.03 16 30 H 0.40 11.84 8.65 -92.71 -0.80 11.03 16 31 H 0.11 4.62 5.92 -2.91 -0.02 4.60 16 32 H 0.10 5.75 6.16 -2.91 -0.02 5.74 16 33 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 34 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -58.07 295.13 5.22 -52.85 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.27 Total: 32.90 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 3.71 Total: -58.59 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.79 Total: -68.13 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -58.07 5.22 -52.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210059732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.299 kcal (2) G-P(sol) polarization free energy of solvation -58.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds