Wall clock time and date at job start Sun Mar 29 2020 21:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47155 * 2 1 4 4 O 1.42900 * 109.46911 * 240.00244 * 2 1 3 5 5 C 1.34923 * 117.00097 * 89.99793 * 4 2 1 6 6 H 1.08002 * 120.00018 * 0.02562 * 5 4 2 7 7 C 1.38638 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31575 * 120.00222 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99836 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47285 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47223 * 119.99746 * 9 7 5 12 12 H 1.48497 * 109.47093 * 239.99715 * 9 7 5 13 13 C 1.50698 * 109.46973 * 120.00395 * 2 1 3 14 14 C 1.33353 * 122.53503 * 85.02195 * 13 2 1 15 15 S 1.75876 * 109.62389 * 179.97438 * 14 13 2 16 16 C 1.75895 * 90.97969 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 125.20727 * 179.97438 * 16 15 14 18 18 C 1.33500 * 109.58163 * 0.26900 * 16 15 14 19 19 H 1.09007 * 109.47386 * 59.99501 * 1 2 3 20 20 H 1.09004 * 109.47687 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.47117 * 299.99723 * 1 2 3 22 22 H 0.96999 * 120.00134 * 180.02562 * 8 7 5 23 23 H 1.07998 * 125.18735 * 0.02562 * 14 13 2 24 24 H 1.07991 * 122.56098 * 179.72135 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2104 0.0788 -2.2680 6 1 2.0147 1.1406 -2.2405 7 6 2.6713 -0.5111 -3.4349 8 7 2.9093 -1.8047 -3.4687 9 14 2.9546 0.5308 -4.9593 10 1 2.6142 1.9454 -4.6624 11 1 4.3805 0.4388 -5.3639 12 1 2.0939 0.0363 -6.0638 13 6 2.0323 -0.7105 1.2304 14 6 2.1794 -2.0348 1.2841 15 16 2.7836 -2.4982 2.8694 16 6 2.8042 -0.8171 3.3864 17 17 3.3024 -0.2576 4.9524 18 6 2.3719 -0.0380 2.3922 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8901 22 1 3.2321 -2.2173 -4.2850 23 1 1.9615 -2.7184 0.4768 24 1 2.2957 1.0352 2.4859 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379630.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:49 Heat of formation + Delta-G solvation = -11.111824 kcal Electronic energy + Delta-G solvation = -11835.816924 eV Core-core repulsion = 9481.553911 eV Total energy + Delta-G solvation = -2354.263013 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.007 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.42761 -36.72648 -35.72639 -32.01394 -30.16506 -28.34276 -24.73764 -24.11212 -21.27558 -18.55799 -17.95605 -17.08592 -15.80137 -14.67661 -14.08429 -13.86898 -13.55987 -13.01783 -12.95223 -12.46775 -12.10831 -11.68847 -11.36492 -11.22300 -11.19229 -10.91400 -10.61900 -10.34273 -10.06971 -9.75143 -9.16803 -8.39239 -8.11901 -7.98190 -5.98237 -3.61371 1.15988 1.36736 2.11924 2.44090 2.96246 3.29368 3.33086 3.37022 4.28420 5.23974 5.34406 5.52759 5.72985 5.90322 6.00230 6.02312 6.21598 6.41452 6.60534 6.77899 6.83635 7.00433 7.44955 8.39851 9.45570 10.11144 11.22670 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.045409 B = 0.006180 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.471355 B = 4529.542392 C = 4645.545046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.051 0.949 4 O -0.282 6.282 5 C -0.358 4.358 6 H 0.064 0.936 7 C 0.023 3.977 8 N -0.888 5.888 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C -0.093 4.093 14 C -0.157 4.157 15 S 0.112 5.888 16 C -0.160 4.160 17 Cl -0.030 7.030 18 C -0.099 4.099 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.257 0.743 23 H 0.180 0.820 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 1.709 12.690 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.087 3.913 3 H 0.069 0.931 4 O -0.197 6.197 5 C -0.437 4.437 6 H 0.082 0.918 7 C -0.175 4.175 8 N -0.531 5.531 9 Si 0.751 3.249 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.104 4.104 14 C -0.292 4.292 15 S 0.374 5.626 16 C -0.303 4.303 17 Cl -0.001 7.001 18 C -0.133 4.133 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.197 0.803 24 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.082 0.053 13.424 13.468 hybrid contribution -0.145 2.127 -1.289 2.491 sum -1.228 2.180 12.135 12.391 Atomic orbital electron populations 1.22250 0.96878 1.01955 1.00730 1.20244 0.92293 0.93896 0.84840 0.93130 1.85679 1.83771 1.33607 1.16602 1.20895 1.43472 0.91000 0.88381 0.91792 1.24929 0.98773 0.96057 0.97747 1.70012 1.46744 1.09168 1.27206 0.85911 0.77923 0.79143 0.81896 1.19911 1.20918 1.20907 1.18919 1.02292 0.93332 0.95864 1.25677 1.05279 0.99618 0.98672 1.84141 1.66270 1.03605 1.08597 1.24961 1.14620 0.98172 0.92501 1.98327 1.89976 1.88572 1.23262 1.20023 1.00481 1.01273 0.91475 0.92079 0.92532 0.93512 0.93273 0.80298 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.51 37.16 0.35 -2.61 14 2 C 0.15 3.16 3.06 -27.88 -0.09 3.08 14 3 H 0.05 1.05 7.77 -51.93 -0.40 0.65 14 4 O -0.28 -7.67 8.89 -16.49 -0.15 -7.81 14 5 C -0.36 -10.17 9.77 30.88 0.30 -9.87 14 6 H 0.06 1.71 7.64 -52.49 -0.40 1.31 14 7 C 0.02 0.67 5.49 -17.51 -0.10 0.57 14 8 N -0.89 -27.22 13.67 55.48 0.76 -26.47 14 9 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 14 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 13 C -0.09 -1.75 4.91 -106.24 -0.52 -2.27 14 14 C -0.16 -2.87 10.51 29.03 0.31 -2.57 14 15 S 0.11 1.69 23.34 -107.50 -2.51 -0.82 14 16 C -0.16 -2.42 7.10 29.07 0.21 -2.22 14 17 Cl -0.03 -0.39 29.29 -51.86 -1.52 -1.90 14 18 C -0.10 -1.61 9.92 -41.15 -0.41 -2.02 14 19 H 0.06 1.16 8.14 -51.92 -0.42 0.73 14 20 H 0.06 1.05 8.14 -51.93 -0.42 0.63 14 21 H 0.05 0.72 8.14 -51.92 -0.42 0.30 14 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 14 23 H 0.18 3.49 7.97 -52.49 -0.42 3.07 14 24 H 0.14 2.06 8.06 -52.49 -0.42 1.64 14 LS Contribution 250.52 15.07 3.78 3.78 Total: -1.00 -30.54 250.52 -6.66 -37.19 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -2.05 Total: -2.78 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 0.05 Total: -17.90 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.76 Total: -26.47 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.15 Total: -7.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.51 Total: -0.82 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.52 Total: -1.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.54 -6.66 -37.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379630.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.082 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds