Wall clock time and date at job start Sun Mar 29 2020 22:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86801 * 120.00334 * 2 1 4 4 H 1.48500 * 109.46923 * 269.99977 * 3 2 1 5 5 H 1.48499 * 109.46967 * 29.99724 * 3 2 1 6 6 H 1.48492 * 109.47232 * 150.00095 * 3 2 1 7 7 C 1.39930 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00017 * 162.72718 * 7 2 1 9 9 C 1.41430 * 119.99991 * 342.72654 * 7 2 1 10 10 C 1.40764 * 120.16578 * 154.82710 * 9 7 2 11 11 C 1.37911 * 120.01016 * 179.97438 * 10 9 7 12 12 F 1.35097 * 119.82589 * 179.97438 * 11 10 9 13 13 C 1.38624 * 120.35020 * 0.02562 * 11 10 9 14 14 C 1.39841 * 120.33331 * 359.97438 * 13 11 10 15 15 C 1.47836 * 120.00895 * 180.02562 * 14 13 11 16 16 C 1.32151 * 124.58048 * 114.70071 * 15 14 13 17 17 C 1.51110 * 110.83295 * 179.90056 * 16 15 14 18 18 C 1.54590 * 104.86842 * 343.78120 * 17 16 15 19 19 C 1.51107 * 124.58365 * 294.99312 * 15 14 13 20 20 C 1.38978 * 119.98085 * 0.02562 * 14 13 11 21 21 H 0.97003 * 119.99398 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.99325 * 0.25188 * 10 9 7 23 23 H 1.08007 * 119.83425 * 179.97438 * 13 11 10 24 24 H 1.08003 * 124.58305 * 359.97438 * 16 15 14 25 25 H 1.09003 * 110.49768 * 224.84977 * 17 16 15 26 26 H 1.08994 * 110.18848 * 102.55682 * 17 16 15 27 27 H 1.08998 * 110.99803 * 266.66723 * 18 17 16 28 28 H 1.08999 * 111.02236 * 142.85543 * 18 17 16 29 29 H 1.09001 * 110.37303 * 315.36859 * 19 15 14 30 30 H 1.09010 * 110.36520 * 77.69666 * 19 15 14 31 31 H 1.07994 * 120.17482 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0514 -1.2329 -0.2783 9 6 1.3486 -2.4092 0.3626 10 6 1.8181 -3.6477 -0.1139 11 6 1.1730 -4.8134 0.2427 12 9 1.6264 -6.0000 -0.2172 13 6 0.0611 -4.7738 1.0696 14 6 -0.4176 -3.5514 1.5513 15 6 -1.6036 -3.5176 2.4333 16 6 -1.5882 -3.1297 3.6965 17 6 -2.9699 -3.2162 4.3022 18 6 -3.9267 -3.3282 3.0931 19 6 -2.9962 -3.9277 2.0140 20 6 0.2218 -2.3683 1.2007 21 1 -0.4849 0.8401 0.0004 22 1 2.6862 -3.6856 -0.7552 23 1 -0.4380 -5.6917 1.3433 24 1 -0.7073 -2.7950 4.2242 25 1 -3.1907 -2.3180 4.8789 26 1 -3.0495 -4.1018 4.9324 27 1 -4.2922 -2.3465 2.7921 28 1 -4.7558 -4.0012 3.3117 29 1 -3.2351 -3.5135 1.0344 30 1 -3.0833 -5.0142 1.9989 31 1 -0.1455 -1.4225 1.5706 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239788969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:42 Heat of formation + Delta-G solvation = -43.279591 kcal Electronic energy + Delta-G solvation = -15414.021392 eV Core-core repulsion = 12766.249342 eV Total energy + Delta-G solvation = -2647.772050 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.096 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -49.64966 -39.99175 -38.47014 -35.56250 -32.57979 -31.11827 -29.27676 -28.36330 -27.37151 -23.12217 -22.99826 -21.52944 -19.93572 -18.64601 -17.53214 -17.02072 -16.67489 -16.50906 -16.31136 -16.16081 -15.88331 -14.70772 -14.11704 -13.58267 -13.53568 -13.32417 -13.01567 -12.91014 -12.79676 -12.44130 -12.32650 -12.16965 -12.04515 -11.92934 -11.86455 -11.38763 -11.06497 -9.81365 -9.38577 -9.07771 -8.73173 -6.49444 0.61610 0.80095 1.34994 1.38318 1.49243 1.54511 2.17616 2.57219 3.47398 3.60253 3.84585 3.91458 4.23655 4.27792 4.41256 4.53245 4.67410 4.85910 4.88665 4.91104 4.99226 5.07159 5.10177 5.17550 5.22651 5.40713 5.53138 5.60905 5.74580 5.88993 5.96023 6.02607 6.20105 6.53455 6.79604 6.82437 8.23561 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.009455 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.076972 B = 2960.657083 C = 4205.903970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.103 3.897 10 C -0.282 4.282 11 C 0.109 3.891 12 F -0.161 7.161 13 C -0.265 4.265 14 C -0.009 4.009 15 C -0.105 4.105 16 C -0.171 4.171 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.088 4.088 20 C -0.172 4.172 21 H 0.293 0.707 22 H 0.107 0.893 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -0.920 6.015 8.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.518 4.518 8 H 0.100 0.900 9 C 0.100 3.900 10 C -0.303 4.303 11 C 0.090 3.910 12 F -0.140 7.140 13 C -0.285 4.285 14 C -0.010 4.010 15 C -0.105 4.105 16 C -0.189 4.189 17 C -0.124 4.124 18 C -0.153 4.153 19 C -0.125 4.125 20 C -0.191 4.191 21 H 0.104 0.896 22 H 0.125 0.875 23 H 0.138 0.862 24 H 0.132 0.868 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.092 -0.820 5.979 8.575 hybrid contribution 0.835 0.335 -0.559 1.060 sum -5.257 -0.484 5.420 7.566 Atomic orbital electron populations 1.69865 1.09056 1.31112 1.33763 1.26820 0.95542 1.04641 0.90898 0.85152 0.79139 0.75477 0.79713 1.18501 1.18702 1.18142 1.19860 0.98399 0.91931 1.41650 0.90007 1.17678 0.91477 0.92147 0.88709 1.21090 1.06441 0.92060 1.10663 1.17530 0.95889 0.79722 0.97821 1.91340 1.89013 1.45761 1.87885 1.20522 1.01252 0.97943 1.08780 1.18433 0.94161 0.92177 0.96200 1.20880 0.94071 1.00839 0.94684 1.23764 0.99540 1.00546 0.95055 1.21297 0.90182 1.03023 0.97910 1.22437 0.97378 1.01534 0.93917 1.21276 0.90578 1.01063 0.99567 1.21452 0.99428 0.96444 1.01800 0.89639 0.87532 0.86158 0.86773 0.89898 0.89120 0.91262 0.88345 0.92596 0.89962 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.44 10.97 21.82 0.24 -41.20 16 2 C 0.04 1.86 5.14 85.25 0.44 2.29 16 3 Si 0.99 36.95 29.59 68.60 2.03 38.98 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.49 -26.19 9.05 23.47 0.21 -25.97 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.17 16 9 C 0.10 5.63 5.56 -21.33 -0.12 5.51 16 10 C -0.28 -14.75 9.76 22.81 0.22 -14.52 16 11 C 0.11 5.38 7.27 22.28 0.16 5.54 16 12 F -0.16 -7.37 17.26 44.97 0.78 -6.60 16 13 C -0.27 -12.38 9.76 22.75 0.22 -12.16 16 14 C -0.01 -0.44 5.64 -20.17 -0.11 -0.55 16 15 C -0.10 -4.05 5.50 -18.19 -0.10 -4.15 16 16 C -0.17 -5.76 10.67 24.82 0.26 -5.50 16 17 C -0.09 -2.13 6.80 30.52 0.21 -1.92 16 18 C -0.12 -2.76 7.17 31.67 0.23 -2.53 16 19 C -0.09 -2.76 6.74 30.52 0.21 -2.56 16 20 C -0.17 -9.06 8.41 23.00 0.19 -8.87 16 21 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 22 H 0.11 5.32 8.06 -2.91 -0.02 5.30 16 23 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 24 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.11 6.12 6.18 -2.91 -0.02 6.10 16 Total: -1.00 -58.25 272.02 6.19 -52.05 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.12 Total: 22.17 kcal Atomic # 6 Polarization: -67.43 SS G_CDS: 2.02 Total: -65.40 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.24 Total: -41.20 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.78 Total: -6.60 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -58.25 6.19 -52.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239788969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.773 kcal (2) G-P(sol) polarization free energy of solvation -58.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds