Wall clock time and date at job start Sun Mar 29 2020 21:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.52995 * 109.47230 * 239.99543 * 2 1 3 5 5 C 1.50702 * 109.46957 * 120.00052 * 2 1 3 6 6 C 1.33135 * 119.99933 * 359.72019 * 5 2 1 7 7 C 1.47247 * 119.99985 * 180.27561 * 6 5 2 8 8 C 1.40520 * 120.36981 * 179.72071 * 7 6 5 9 9 C 1.36572 * 118.58931 * 179.79846 * 8 7 6 10 10 C 1.40945 * 119.27835 * 0.45673 * 9 8 7 11 11 C 1.40882 * 119.65525 * 179.76323 * 10 9 8 12 12 H 1.08002 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.40112 * 120.00114 * 180.02562 * 11 10 9 14 14 N 1.30709 * 120.00091 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47039 * 60.00050 * 15 13 11 17 17 H 1.48508 * 109.46888 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47231 * 299.99877 * 15 13 11 19 19 N 1.33824 * 120.68786 * 359.79208 * 10 9 8 20 20 C 1.31126 * 121.52737 * 359.96674 * 19 10 9 21 21 H 1.09001 * 109.47075 * 300.00374 * 1 2 3 22 22 H 1.09003 * 109.46771 * 60.00073 * 1 2 3 23 23 H 1.08993 * 109.47254 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47277 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.46996 * 299.99944 * 3 2 1 26 26 H 1.09001 * 109.47339 * 59.99788 * 3 2 1 27 27 H 1.09001 * 109.47730 * 300.00418 * 4 2 1 28 28 H 1.09003 * 109.46931 * 60.00481 * 4 2 1 29 29 H 1.08996 * 109.47042 * 180.02562 * 4 2 1 30 30 H 1.08002 * 120.00299 * 180.02562 * 5 2 1 31 31 H 1.08002 * 119.99712 * 0.27637 * 6 5 2 32 32 H 1.08001 * 120.70672 * 0.02562 * 8 7 6 33 33 H 1.08003 * 120.36373 * 180.22380 * 9 8 7 34 34 H 0.97000 * 120.00501 * 179.97438 * 14 13 11 35 35 H 1.08007 * 119.67128 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.1671 -1.2115 2.1096 7 6 1.6579 -1.9003 3.3149 8 6 0.7517 -2.4270 4.2509 9 6 1.2467 -3.0624 5.3538 10 6 2.6423 -3.1616 5.5238 11 6 3.1615 -3.8111 6.6611 12 1 2.4910 -4.2301 7.3969 13 6 4.5477 -3.9134 6.8377 14 7 5.3592 -3.4067 5.9470 15 14 5.2362 -4.7738 8.3461 16 1 4.7666 -6.1824 8.3698 17 1 6.7202 -4.7480 8.2964 18 1 4.7691 -4.0756 9.5706 19 7 3.4793 -2.6449 4.6165 20 6 3.0361 -2.0330 3.5448 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9564 0.8900 27 1 1.6767 -1.7490 -1.2492 28 1 1.6768 -0.2075 -2.1392 29 1 3.1300 -0.7217 -1.2489 30 1 3.0941 -0.8088 1.4017 31 1 0.1053 -1.1127 1.9387 32 1 -0.3136 -2.3345 4.0994 33 1 0.5760 -3.4811 6.0896 34 1 6.3188 -3.4771 6.0694 35 1 3.7386 -1.6267 2.8321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241563791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:49 Heat of formation + Delta-G solvation = 24.112995 kcal Electronic energy + Delta-G solvation = -15315.451498 eV Core-core repulsion = 12891.780778 eV Total energy + Delta-G solvation = -2423.670721 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.36851 -37.27209 -33.94130 -31.98049 -30.62910 -28.72799 -27.12189 -26.99851 -25.30728 -22.44188 -21.68244 -19.89312 -17.65994 -17.49187 -15.77415 -15.08868 -14.57520 -14.13198 -13.91943 -13.77213 -13.45943 -12.71501 -12.30158 -12.16829 -12.13047 -11.88465 -11.48080 -11.31103 -11.28090 -11.11006 -11.02573 -10.76782 -10.60409 -10.34072 -10.07671 -9.89362 -9.73062 -8.94630 -8.21724 -7.58829 -7.12697 -6.50326 -4.55605 2.19714 2.96339 3.02211 3.04195 3.08511 3.69158 3.85373 4.72850 5.08520 5.12791 5.28053 5.73839 5.75129 5.80095 5.83693 5.90054 5.97043 6.05564 6.06976 6.09099 6.13212 6.22968 6.31475 6.44192 6.56723 6.63212 6.74104 6.81809 7.01340 7.27555 7.30231 7.45142 7.71986 7.87344 7.99507 8.15573 8.54104 8.84049 10.04251 10.19873 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.050006 B = 0.005141 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.794644 B = 5445.372483 C = 5814.100502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.222 4.222 6 C -0.053 4.053 7 C -0.282 4.282 8 C -0.040 4.040 9 C -0.275 4.275 10 C 0.252 3.748 11 C -0.415 4.415 12 H 0.086 0.914 13 C 0.065 3.935 14 N -0.704 5.704 15 Si 0.911 3.089 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.263 1.263 19 N -0.490 5.490 20 C 0.151 3.849 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.276 0.724 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 4.017 -6.988 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.192 4.192 4 C -0.192 4.192 5 C -0.240 4.240 6 C -0.072 4.072 7 C -0.287 4.287 8 C -0.064 4.064 9 C -0.297 4.297 10 C 0.128 3.872 11 C -0.445 4.445 12 H 0.104 0.896 13 C -0.162 4.162 14 N -0.324 5.324 15 Si 0.734 3.266 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.188 1.188 19 N -0.202 5.202 20 C -0.018 4.018 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.807 3.920 -6.820 8.352 hybrid contribution -0.644 -0.290 0.515 0.875 sum -3.451 3.629 -6.304 8.051 Atomic orbital electron populations 1.21931 0.95365 1.01547 1.00993 1.19400 0.94680 0.94611 0.94150 1.21816 1.00939 0.95540 1.00925 1.21816 1.00937 1.00175 0.96291 1.22824 0.98976 1.05630 0.96604 1.21566 0.97715 0.95068 0.92824 1.19324 0.94755 1.15061 0.99535 1.20698 0.96986 0.95105 0.93572 1.21411 0.96606 1.10859 1.00858 1.18656 0.87590 0.89223 0.91692 1.19687 0.91955 1.28738 1.04083 0.89623 1.26173 0.97440 0.94986 0.97623 1.70118 1.04141 1.27824 1.30275 0.86331 0.78194 0.80526 0.81517 1.18769 1.20027 1.18766 1.68769 1.36417 1.12739 1.02258 1.22852 0.91627 0.92924 0.94350 0.92570 0.93397 0.92576 0.92821 0.93399 0.92777 0.92778 0.93407 0.92822 0.87726 0.88295 0.88730 0.88355 0.91243 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.13 37.16 0.26 -1.53 16 2 C -0.03 -0.39 0.99 -155.66 -0.15 -0.55 16 3 C -0.13 -1.70 8.46 37.16 0.31 -1.39 16 4 C -0.13 -1.70 8.46 37.16 0.31 -1.39 16 5 C -0.22 -3.81 8.20 -36.08 -0.30 -4.11 16 6 C -0.05 -1.00 8.89 -37.70 -0.34 -1.34 16 7 C -0.28 -6.42 5.91 -104.58 -0.62 -7.04 16 8 C -0.04 -0.92 9.86 -39.32 -0.39 -1.31 16 9 C -0.27 -6.80 9.76 -39.16 -0.38 -7.18 16 10 C 0.25 6.92 6.55 -84.97 -0.56 6.36 16 11 C -0.41 -10.98 9.11 -37.88 -0.35 -11.33 16 12 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 13 C 0.06 1.62 5.50 -17.33 -0.10 1.53 16 14 N -0.70 -18.56 11.44 55.56 0.64 -17.92 16 15 Si 0.91 18.16 29.56 -169.99 -5.02 13.14 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 19 N -0.49 -13.67 7.83 -10.79 -0.08 -13.75 16 20 C 0.15 3.75 10.58 -17.06 -0.18 3.57 16 21 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.90 6.05 -52.49 -0.32 1.58 16 31 H 0.10 1.70 5.75 -52.49 -0.30 1.40 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 34 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 35 H 0.12 2.75 6.17 -52.48 -0.32 2.43 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -28.13 291.75 -7.61 -35.74 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.07 Total: 4.10 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.46 Total: -25.70 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.55 Total: -31.68 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.13 -7.61 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241563791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.853 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds