Wall clock time and date at job start Sun Mar 29 2020 22:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86802 * 119.99953 * 2 1 4 4 H 1.48504 * 109.46756 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47205 * 299.99287 * 3 2 1 6 6 H 1.48494 * 109.47328 * 59.99995 * 3 2 1 7 7 C 1.40088 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00079 * 197.52768 * 7 2 1 9 9 C 1.40631 * 119.99714 * 17.53665 * 7 2 1 10 10 C 1.41171 * 120.64167 * 38.67866 * 9 7 2 11 11 F 1.35108 * 120.10966 * 359.97438 * 10 9 7 12 12 C 1.37574 * 119.77781 * 180.28069 * 10 9 7 13 13 C 1.38741 * 121.17638 * 359.71450 * 12 10 9 14 14 C 1.37881 * 121.34873 * 0.02562 * 13 12 10 15 15 C 1.39509 * 120.10919 * 359.97438 * 14 13 12 16 16 C 1.47200 * 120.56813 * 179.97438 * 15 14 13 17 17 N 1.31806 * 125.86310 * 180.28602 * 16 15 14 18 18 C 1.33483 * 109.24592 * 180.19342 * 17 16 15 19 19 C 1.35242 * 108.43927 * 359.56260 * 18 17 16 20 20 N 1.36687 * 125.86349 * 0.02562 * 16 15 14 21 21 H 0.97002 * 126.51550 * 359.95610 * 20 16 15 22 22 H 0.96999 * 119.99750 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.41221 * 179.69145 * 12 10 9 24 24 H 1.07998 * 119.32565 * 180.02562 * 13 12 10 25 25 H 1.08003 * 119.94466 * 179.97438 * 14 13 12 26 26 H 1.07998 * 125.77798 * 179.82650 * 18 17 16 27 27 H 1.07993 * 126.46960 * 180.23963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7018 1.3463 0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8831 2.3965 1.2124 7 6 2.0082 -1.2132 0.0005 8 1 3.0506 -1.2348 0.2822 9 6 1.3540 -2.4029 -0.3659 10 6 0.4153 -2.4125 -1.4203 11 9 0.1358 -1.2724 -2.0893 12 6 -0.2186 -3.5852 -1.7601 13 6 0.0512 -4.7684 -1.0877 14 6 0.9630 -4.8145 -0.0545 15 6 1.6376 -3.6573 0.3357 16 6 2.6126 -3.6948 1.4378 17 7 3.3022 -2.6683 1.8940 18 6 4.0889 -3.0756 2.8925 19 6 3.8870 -4.3991 3.0836 20 7 2.9548 -4.7991 2.1671 21 1 2.6026 -5.6961 2.0559 22 1 -0.4850 0.8401 -0.0004 23 1 -0.9394 -3.5848 -2.5644 24 1 -0.4635 -5.6719 -1.3796 25 1 1.1553 -5.7479 0.4537 26 1 4.7682 -2.4527 3.4554 27 1 4.3713 -5.0225 3.8205 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242019491.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:22 Heat of formation + Delta-G solvation = 18.307638 kcal Electronic energy + Delta-G solvation = -15638.128739 eV Core-core repulsion = 12889.486969 eV Total energy + Delta-G solvation = -2748.641770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -48.94000 -42.48036 -38.68634 -35.55453 -33.28857 -32.46266 -31.21123 -28.99176 -27.08870 -23.83200 -23.04480 -21.79567 -21.11142 -19.50651 -18.75301 -17.20446 -16.97589 -16.33206 -16.03726 -15.76236 -15.51020 -14.81365 -14.64467 -14.51160 -14.06555 -13.49545 -13.23830 -13.06469 -12.95325 -12.47309 -12.31109 -11.92908 -11.40955 -10.97150 -10.81021 -10.44158 -10.03349 -9.08813 -8.74181 -8.48242 -6.26976 0.33277 0.92113 1.36144 1.47095 1.52378 1.59825 2.23584 2.40435 2.49215 2.81913 3.53665 3.91935 4.07083 4.28440 4.49038 4.54560 4.68782 4.73517 4.95818 5.10986 5.26907 5.35007 5.57690 5.72720 5.91039 5.92039 6.13562 6.28774 6.60137 6.80495 6.81668 6.97556 7.54384 8.30615 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.013328 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.764039 B = 2100.360435 C = 3354.517566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.438 4.438 8 H 0.099 0.901 9 C 0.079 3.921 10 C -0.006 4.006 11 F -0.158 7.158 12 C -0.126 4.126 13 C -0.212 4.212 14 C -0.077 4.077 15 C -0.149 4.149 16 C 0.261 3.739 17 N -0.510 5.510 18 C -0.073 4.073 19 C -0.048 4.048 20 N -0.563 5.563 21 H 0.429 0.571 22 H 0.288 0.712 23 H 0.122 0.878 24 H 0.142 0.858 25 H 0.135 0.865 26 H 0.179 0.821 27 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -8.032 3.491 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.185 4.185 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.466 4.466 8 H 0.117 0.883 9 C 0.074 3.926 10 C -0.027 4.027 11 F -0.137 7.137 12 C -0.146 4.146 13 C -0.231 4.231 14 C -0.097 4.097 15 C -0.153 4.153 16 C 0.002 3.998 17 N -0.229 5.229 18 C -0.222 4.222 19 C -0.182 4.182 20 N -0.168 5.168 21 H 0.269 0.731 22 H 0.098 0.902 23 H 0.140 0.860 24 H 0.160 0.840 25 H 0.153 0.847 26 H 0.196 0.804 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.542 -7.007 3.251 8.498 hybrid contribution -0.098 0.054 0.146 0.184 sum 3.444 -6.953 3.397 8.470 Atomic orbital electron populations 1.69800 1.09159 1.30807 1.33762 1.26756 0.95325 1.04551 0.91832 0.85235 0.79741 0.76623 0.78697 1.18189 1.19043 1.19025 1.19876 0.99206 0.90906 1.36617 0.88326 1.18768 0.90732 0.93359 0.89779 1.18070 1.05668 0.81964 0.96984 1.91275 1.92964 1.50596 1.78907 1.20925 0.99941 0.92296 1.01422 1.20354 1.04585 0.97147 1.01012 1.20881 0.95870 0.95813 0.97161 1.18657 1.03680 0.94846 0.98123 1.21204 0.99601 0.82489 0.96491 1.70735 1.10169 1.29063 1.12978 1.22935 1.04091 0.94861 1.00334 1.23315 0.98167 0.97578 0.99125 1.43410 1.34047 1.11498 1.27872 0.73075 0.90197 0.86017 0.84017 0.84723 0.80421 0.76332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.63 11.15 21.85 0.24 -45.39 15 2 C 0.03 1.75 4.60 85.30 0.39 2.14 15 3 Si 0.98 42.57 29.60 68.60 2.03 44.60 15 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 7 C -0.44 -25.02 7.69 23.30 0.18 -24.85 15 8 H 0.10 5.75 6.24 -2.91 -0.02 5.74 15 9 C 0.08 4.38 5.53 -19.82 -0.11 4.27 15 10 C -0.01 -0.34 6.67 22.83 0.15 -0.19 15 11 F -0.16 -8.96 14.42 44.97 0.65 -8.31 15 12 C -0.13 -5.66 9.94 22.23 0.22 -5.43 15 13 C -0.21 -8.17 9.98 22.31 0.22 -7.94 15 14 C -0.08 -3.01 9.69 22.49 0.22 -2.80 15 15 C -0.15 -7.13 6.07 -18.46 -0.11 -7.24 15 16 C 0.26 11.50 7.71 136.15 1.05 12.55 15 17 N -0.51 -24.06 8.39 -189.56 -1.59 -25.65 15 18 C -0.07 -2.64 11.84 83.75 0.99 -1.64 15 19 C -0.05 -1.33 12.04 83.24 1.00 -0.32 15 20 N -0.56 -17.72 6.08 -187.35 -1.14 -18.86 15 21 H 0.43 9.94 8.12 -92.71 -0.75 9.19 15 22 H 0.29 14.78 8.29 -92.71 -0.77 14.02 15 23 H 0.12 4.80 8.06 -2.91 -0.02 4.78 15 24 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 25 H 0.14 3.94 7.21 -2.91 -0.02 3.92 15 26 H 0.18 5.33 8.06 -2.91 -0.02 5.31 15 27 H 0.22 3.58 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -70.36 244.80 4.87 -65.50 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.47 Total: 19.56 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.21 Total: -31.47 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.49 Total: -89.89 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.65 Total: -8.31 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.36 4.87 -65.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242019491.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.807 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds