Wall clock time and date at job start Sun Mar 29 2020 22:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86804 * 119.99677 * 2 1 4 4 H 1.48499 * 109.46864 * 239.99815 * 3 2 1 5 5 H 1.48504 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47045 * 119.99872 * 3 2 1 7 7 C 1.39924 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99643 * 197.40731 * 7 2 1 9 9 C 1.41441 * 120.00408 * 17.41228 * 7 2 1 10 10 C 1.40826 * 120.59598 * 203.41599 * 9 7 2 11 11 N 1.31522 * 120.71214 * 179.97438 * 10 9 7 12 12 C 1.31908 * 122.14321 * 359.97438 * 11 10 9 13 13 C 1.39865 * 121.12385 * 359.97438 * 12 11 10 14 14 C 1.47894 * 120.43097 * 179.97438 * 13 12 11 15 15 N 1.30210 * 125.47250 * 0.02562 * 14 13 12 16 16 C 1.31307 * 117.04824 * 179.97438 * 15 14 13 17 17 C 1.33727 * 115.84385 * 0.24713 * 16 15 14 18 18 S 1.76176 * 125.47030 * 179.97438 * 14 13 12 19 19 C 1.39392 * 119.13761 * 0.27577 * 13 12 11 20 20 H 0.97002 * 120.00584 * 0.02562 * 1 2 3 21 21 H 1.07991 * 119.64727 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.43442 * 180.02562 * 12 11 10 23 23 H 1.07997 * 122.08394 * 179.97438 * 16 15 14 24 24 H 1.08001 * 125.89470 * 179.72944 * 17 16 15 25 25 H 1.08005 * 120.96776 * 179.73315 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0509 -1.2330 0.2804 9 6 1.3494 -2.4088 -0.3655 10 6 1.8322 -3.6561 0.0755 11 7 1.2213 -4.7706 -0.2631 12 6 0.1417 -4.7769 -1.0208 13 6 -0.4095 -3.5856 -1.5039 14 6 -1.6202 -3.6105 -2.3529 15 7 -2.2644 -4.6812 -2.7191 16 6 -3.3234 -4.5111 -3.4766 17 6 -3.6176 -3.2452 -3.7915 18 16 -2.4232 -2.1962 -3.0302 19 6 0.2009 -2.3750 -1.1800 20 1 -0.4851 0.8400 -0.0004 21 1 2.7134 -3.6980 0.6983 22 1 -0.3252 -5.7179 -1.2718 23 1 -3.9173 -5.3422 -3.8272 24 1 -4.4453 -2.9213 -4.4050 25 1 -0.1971 -1.4379 -1.5406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242897022.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:30 Heat of formation + Delta-G solvation = 63.031326 kcal Electronic energy + Delta-G solvation = -13056.090936 eV Core-core repulsion = 10739.768612 eV Total energy + Delta-G solvation = -2316.322324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -39.12652 -38.14399 -34.21288 -31.98619 -30.48924 -28.72750 -25.74105 -24.78189 -21.98646 -21.57093 -19.20384 -17.75073 -17.02627 -15.70649 -15.28255 -15.18377 -14.43617 -13.99608 -13.80768 -12.91305 -12.73212 -12.38805 -11.82631 -11.64457 -11.45345 -11.14137 -10.95452 -10.69702 -10.12468 -9.52375 -9.44219 -9.30382 -8.86546 -8.25186 -8.03995 -7.46794 -6.97347 -4.62395 0.86200 1.79308 2.20681 2.46452 2.71379 2.96498 2.98343 3.10123 3.50278 3.76861 4.47507 4.63301 5.42171 5.48344 5.59392 5.81618 5.95751 6.37255 6.47537 6.54972 6.75307 6.94341 6.97033 7.45751 7.66082 7.71094 8.16483 8.24582 8.50873 8.54235 9.45700 9.93738 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.028148 B = 0.009019 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.517667 B = 3103.971956 C = 4021.749866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.447 4.447 8 H 0.087 0.913 9 C 0.059 3.941 10 C -0.001 4.001 11 N -0.470 5.470 12 C 0.015 3.985 13 C -0.077 4.077 14 C 0.167 3.833 15 N -0.488 5.488 16 C 0.043 3.957 17 C -0.285 4.285 18 S 0.080 5.920 19 C -0.107 4.107 20 H 0.287 0.713 21 H 0.132 0.868 22 H 0.134 0.866 23 H 0.167 0.833 24 H 0.170 0.830 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 1.025 -5.023 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.055 3.945 10 C -0.163 4.163 11 N -0.177 5.177 12 C -0.146 4.146 13 C -0.084 4.084 14 C -0.108 4.108 15 N -0.202 5.202 16 C -0.109 4.109 17 C -0.424 4.424 18 S 0.337 5.663 19 C -0.136 4.136 20 H 0.098 0.902 21 H 0.150 0.850 22 H 0.152 0.848 23 H 0.184 0.816 24 H 0.187 0.813 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.929 0.997 -4.567 6.107 hybrid contribution -0.801 1.007 -0.663 1.448 sum -4.730 2.004 -5.231 7.331 Atomic orbital electron populations 1.69750 1.07732 1.30097 1.33748 1.25994 0.94823 1.01769 0.91928 0.86253 0.80127 0.79573 0.80268 1.18566 1.20121 1.18691 1.19535 0.98256 0.90613 1.39271 0.89493 1.18388 0.91954 0.93979 0.90197 1.22713 1.02048 0.87932 1.03596 1.67079 1.07835 1.31687 1.11109 1.21912 0.95437 0.95505 1.01788 1.18705 0.92848 0.96576 1.00242 1.26266 0.97957 0.88515 0.98053 1.66602 1.08319 1.30291 1.14994 1.21594 0.95142 0.96373 0.97823 1.26889 1.07175 0.96824 1.11507 1.85203 1.21947 1.13777 1.45394 1.21852 0.97947 0.95336 0.98431 0.90216 0.85033 0.84820 0.81609 0.81262 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.94 10.91 55.55 0.61 -18.33 15 2 C 0.07 1.72 5.18 -17.35 -0.09 1.63 15 3 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 15 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 7 C -0.45 -10.94 9.08 -37.73 -0.34 -11.28 15 8 H 0.09 2.00 7.90 -52.49 -0.41 1.58 15 9 C 0.06 1.50 5.59 -106.71 -0.60 0.90 15 10 C 0.00 -0.02 10.96 -16.71 -0.18 -0.21 15 11 N -0.47 -11.50 10.32 -12.23 -0.13 -11.62 15 12 C 0.01 0.35 10.84 -16.91 -0.18 0.17 15 13 C -0.08 -1.83 5.88 -104.91 -0.62 -2.44 15 14 C 0.17 3.52 7.36 -14.29 -0.11 3.41 15 15 N -0.49 -9.65 10.15 -11.35 -0.12 -9.77 15 16 C 0.04 0.69 11.25 -19.36 -0.22 0.47 15 17 C -0.28 -4.23 11.35 29.15 0.33 -3.90 15 18 S 0.08 1.44 22.47 -107.50 -2.42 -0.97 15 19 C -0.11 -2.66 8.35 -38.17 -0.32 -2.97 15 20 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 21 H 0.13 2.89 8.06 -52.49 -0.42 2.47 15 22 H 0.13 2.99 7.81 -52.49 -0.41 2.58 15 23 H 0.17 2.05 8.06 -52.49 -0.42 1.63 15 24 H 0.17 1.90 8.06 -52.49 -0.42 1.47 15 25 H 0.14 3.34 5.53 -52.48 -0.29 3.05 15 LS Contribution 244.33 15.07 3.68 3.68 Total: -1.00 -26.76 244.33 -7.24 -34.00 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -1.52 Total: 4.96 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.32 Total: -14.22 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.36 Total: -39.72 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.42 Total: -0.97 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.76 -7.24 -34.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242897022.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.029 kcal (2) G-P(sol) polarization free energy of solvation -26.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds