Wall clock time and date at job start Sun Mar 29 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86808 * 119.99929 * 2 1 4 4 H 1.48495 * 109.47064 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46819 * 120.00178 * 3 2 1 6 6 H 1.48504 * 109.46885 * 240.00171 * 3 2 1 7 7 C 1.40043 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99638 * 358.54274 * 7 2 1 9 9 C 1.41320 * 120.00270 * 178.54285 * 7 2 1 10 10 C 1.40882 * 120.13865 * 181.59379 * 9 7 2 11 11 N 1.31873 * 119.99986 * 179.73201 * 10 9 7 12 12 C 1.32166 * 120.30462 * 0.56723 * 11 10 9 13 13 C 1.40187 * 120.27457 * 359.68638 * 12 11 10 14 14 C 1.47692 * 120.00193 * 180.02562 * 13 12 11 15 15 C 1.31754 * 118.68988 * 179.71031 * 14 13 12 16 16 C 1.50412 * 122.29454 * 180.11463 * 15 14 13 17 17 C 1.53117 * 109.63353 * 343.82810 * 16 15 14 18 18 O 1.43278 * 108.45254 * 47.88028 * 17 16 15 19 19 C 1.42897 * 113.08524 * 291.26816 * 18 17 16 20 20 N 1.32700 * 119.99694 * 0.02562 * 13 12 11 21 21 H 0.97004 * 120.00123 * 174.47218 * 1 2 3 22 22 H 1.08004 * 119.99373 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.86274 * 179.70374 * 12 11 10 24 24 H 1.08008 * 118.85361 * 0.35426 * 15 14 13 25 25 H 1.09001 * 109.59458 * 223.66965 * 16 15 14 26 26 H 1.09001 * 109.23641 * 103.75669 * 16 15 14 27 27 H 1.09007 * 109.64037 * 288.19219 * 17 16 15 28 28 H 1.08999 * 109.81892 * 167.67136 * 17 16 15 29 29 H 1.08999 * 109.36626 * 290.27773 * 19 18 17 30 30 H 1.09006 * 109.36280 * 170.66205 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6964 1.2125 6 1 3.0950 1.6965 -1.2126 7 6 2.0076 -1.2128 -0.0005 8 1 1.4678 -2.1479 0.0228 9 6 3.4204 -1.2129 -0.0317 10 6 4.1271 -2.4312 -0.0662 11 7 5.4453 -2.4281 -0.1005 12 6 6.1100 -1.2858 -0.0915 13 6 5.4193 -0.0665 -0.0519 14 6 6.1681 1.2065 -0.0425 15 6 5.4928 2.3373 -0.0109 16 6 6.1723 3.6792 -0.0017 17 6 7.6478 3.5061 0.3690 18 8 8.1929 2.4439 -0.4232 19 6 7.6696 1.1604 -0.0756 20 7 4.0927 -0.0562 -0.0228 21 1 -0.4850 -0.8362 -0.0809 22 1 3.5889 -3.3676 -0.0693 23 1 7.1897 -1.2916 -0.1149 24 1 4.4136 2.2995 0.0130 25 1 5.6885 4.3289 0.7276 26 1 6.0972 4.1266 -0.9928 27 1 7.7329 3.2553 1.4264 28 1 8.1904 4.4295 0.1668 29 1 8.0441 0.8713 0.9064 30 1 7.9926 0.4265 -0.8140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245158144.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:51 Heat of formation + Delta-G solvation = -5.593984 kcal Electronic energy + Delta-G solvation = -15957.016794 eV Core-core repulsion = 13330.798876 eV Total energy + Delta-G solvation = -2626.217917 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80926 -38.75132 -34.45878 -34.17625 -32.36401 -31.88269 -29.36028 -26.32662 -25.01174 -24.31167 -22.55616 -21.22464 -18.63472 -18.10675 -16.94113 -16.22444 -15.79398 -15.45327 -15.13648 -14.39625 -13.63940 -13.47987 -13.32438 -12.87414 -12.78212 -12.57044 -12.18969 -11.52465 -11.40760 -11.19690 -11.12230 -10.48606 -10.07404 -9.86424 -9.56333 -9.46346 -9.17284 -8.91634 -7.84786 -7.74105 -7.32111 -5.04789 1.55552 2.45461 3.00029 3.36871 3.49459 3.79027 3.95310 4.17534 4.48721 4.76028 5.00044 5.04539 5.25692 5.32648 5.41226 5.55203 5.59224 5.64685 5.75524 5.90091 5.97736 6.00931 6.24341 6.53511 6.66218 6.78362 7.02668 7.17699 7.21554 7.28230 7.77481 7.95053 8.30412 8.73950 9.21596 9.75063 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026937 B = 0.010870 C = 0.007833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.221819 B = 2575.166587 C = 3573.718391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.039 3.961 3 Si 1.150 2.850 4 H -0.326 1.326 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.203 3.797 10 C -0.044 4.044 11 N -0.418 5.418 12 C -0.110 4.110 13 C 0.171 3.829 14 C -0.123 4.123 15 C -0.127 4.127 16 C -0.128 4.128 17 C 0.057 3.943 18 O -0.378 6.378 19 C 0.106 3.894 20 N -0.544 5.544 21 H 0.287 0.713 22 H 0.140 0.860 23 H 0.137 0.863 24 H 0.129 0.871 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 6.242 0.941 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.184 4.184 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.483 4.483 8 H 0.108 0.892 9 C 0.078 3.922 10 C -0.216 4.216 11 N -0.129 5.129 12 C -0.267 4.267 13 C 0.028 3.972 14 C -0.125 4.125 15 C -0.146 4.146 16 C -0.165 4.165 17 C -0.020 4.020 18 O -0.297 6.297 19 C 0.030 3.970 20 N -0.267 5.267 21 H 0.099 0.901 22 H 0.158 0.842 23 H 0.154 0.846 24 H 0.146 0.854 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.162 7.747 0.862 12.029 hybrid contribution -0.357 -2.061 0.141 2.096 sum 8.805 5.686 1.004 10.529 Atomic orbital electron populations 1.70631 1.08107 1.33206 1.29035 1.27889 0.95374 1.06353 0.88755 0.82198 0.70060 0.69820 0.79294 1.25940 1.21181 1.21021 1.20831 0.89928 0.96730 1.40796 0.89174 1.19404 0.94852 0.88126 0.89804 1.23138 0.89914 0.97884 1.10665 1.67658 1.09384 1.29676 1.06159 1.22495 0.99002 0.87916 1.17254 1.20339 0.90428 0.92791 0.93611 1.20238 0.95169 0.92321 1.04759 1.23253 1.01633 0.92984 0.96768 1.21200 0.96052 0.96064 1.03180 1.22654 0.93319 0.91051 0.94979 1.88093 1.65294 1.15545 1.60738 1.21271 0.89057 0.85359 1.01332 1.67148 1.06761 1.28203 1.24591 0.90118 0.84239 0.84585 0.85391 0.89658 0.89582 0.92738 0.88604 0.91713 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.66 13.65 55.55 0.76 -19.90 16 2 C 0.04 1.03 5.52 -17.34 -0.10 0.94 16 3 Si 1.15 27.64 22.36 -169.99 -3.80 23.84 16 4 H -0.33 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.28 -6.75 6.56 56.52 0.37 -6.38 16 6 H -0.28 -6.80 6.55 56.52 0.37 -6.43 16 7 C -0.45 -11.83 9.60 -37.73 -0.36 -12.19 16 8 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.20 5.26 6.42 -84.84 -0.55 4.71 16 10 C -0.04 -1.07 10.98 -16.53 -0.18 -1.25 16 11 N -0.42 -9.82 10.47 -12.00 -0.13 -9.94 16 12 C -0.11 -2.41 10.52 -16.68 -0.18 -2.58 16 13 C 0.17 3.89 6.70 -82.90 -0.56 3.34 16 14 C -0.12 -2.36 5.88 -102.86 -0.61 -2.97 16 15 C -0.13 -2.37 9.55 -36.33 -0.35 -2.72 16 16 C -0.13 -1.76 6.36 -27.96 -0.18 -1.93 16 17 C 0.06 0.70 6.88 37.22 0.26 0.95 16 18 O -0.38 -5.65 10.83 -35.23 -0.38 -6.03 16 19 C 0.11 1.64 5.83 35.79 0.21 1.85 16 20 N -0.54 -13.80 4.25 -7.60 -0.03 -13.83 16 21 H 0.29 7.11 8.72 -40.82 -0.36 6.76 16 22 H 0.14 3.05 8.06 -52.48 -0.42 2.63 16 23 H 0.14 2.48 6.56 -52.49 -0.34 2.14 16 24 H 0.13 2.70 2.08 -52.48 -0.11 2.59 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.63 8.09 -51.93 -0.42 0.20 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 1.54 7.14 -51.93 -0.37 1.16 16 LS Contribution 247.30 15.07 3.73 3.73 Total: -1.00 -29.07 247.30 -5.43 -34.51 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.00 Total: -0.50 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.58 Total: -11.86 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.60 Total: -43.68 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 14 Polarization: 27.64 SS G_CDS: -3.80 Total: 23.84 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.07 -5.43 -34.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245158144.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.912 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds