Wall clock time and date at job start Sun Mar 29 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86804 * 119.99779 * 2 1 4 4 H 1.48493 * 109.47127 * 85.60590 * 3 2 1 5 5 H 1.48501 * 109.47154 * 205.60807 * 3 2 1 6 6 H 1.48495 * 109.46928 * 325.60440 * 3 2 1 7 7 C 1.40043 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00393 * 18.86165 * 7 2 1 9 9 C 1.40802 * 119.99862 * 198.87181 * 7 2 1 10 10 C 1.41031 * 120.34633 * 41.30256 * 9 7 2 11 11 F 1.35095 * 120.10439 * 0.02562 * 10 9 7 12 12 C 1.37732 * 119.79584 * 180.02562 * 10 9 7 13 13 C 1.38819 * 120.52173 * 359.97438 * 12 10 9 14 14 C 1.38132 * 120.71398 * 359.97438 * 13 12 10 15 15 C 1.39054 * 120.17983 * 359.76384 * 14 13 12 16 16 C 1.47897 * 120.26371 * 180.25345 * 15 14 13 17 17 C 1.41070 * 126.06882 * 356.97812 * 16 15 14 18 18 C 1.34985 * 107.85123 * 179.82277 * 17 16 15 19 19 N 1.35135 * 108.04685 * 0.43115 * 18 17 16 20 20 H 0.96994 * 125.91116 * 179.69614 * 19 18 17 21 21 N 1.31893 * 126.07328 * 177.28471 * 16 15 14 22 22 H 0.97002 * 120.00209 * 0.02562 * 1 2 3 23 23 H 1.07998 * 119.73485 * 180.02562 * 12 10 9 24 24 H 1.08001 * 119.63900 * 179.97438 * 13 12 10 25 25 H 1.08003 * 119.90705 * 180.02562 * 14 13 12 26 26 H 1.07998 * 126.07360 * 0.02562 * 17 16 15 27 27 H 1.07999 * 125.97170 * 180.17649 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.3966 2.1001 1.3959 5 1 3.5829 1.4153 -0.6051 6 1 1.4889 2.6240 -0.7909 7 6 2.0083 -1.2128 -0.0005 8 1 1.5118 -2.1229 -0.3033 9 6 3.3595 -1.2457 0.3939 10 6 3.7970 -0.4907 1.5018 11 9 2.9196 0.2697 2.1926 12 6 5.1215 -0.5308 1.8774 13 6 6.0304 -1.3095 1.1741 14 6 5.6250 -2.0582 0.0864 15 6 4.2937 -2.0437 -0.3151 16 6 3.8565 -2.8490 -1.4760 17 6 4.6881 -3.6304 -2.3053 18 6 3.9099 -4.2098 -3.2437 19 7 2.6355 -3.8119 -3.0347 20 1 1.8646 -4.0711 -3.5631 21 7 2.6206 -2.9596 -1.9231 22 1 -0.4850 0.8400 -0.0004 23 1 5.4553 0.0474 2.7262 24 1 7.0658 -1.3301 1.4808 25 1 6.3431 -2.6598 -0.4511 26 1 5.7571 -3.7471 -2.2050 27 1 4.2474 -4.8721 -4.0272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245314050.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:07 Heat of formation + Delta-G solvation = 56.324303 kcal Electronic energy + Delta-G solvation = -15694.742852 eV Core-core repulsion = 12947.749608 eV Total energy + Delta-G solvation = -2746.993244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.70071 -40.25096 -37.37018 -33.62252 -31.80823 -30.32506 -29.12160 -28.54105 -25.33236 -22.24156 -21.49473 -20.08037 -18.95174 -17.96936 -17.24973 -15.75222 -15.61212 -14.82365 -14.36632 -13.99408 -13.84224 -13.43441 -13.02094 -12.78465 -12.29492 -12.09331 -11.65027 -11.53972 -10.97806 -10.68603 -10.35646 -10.14974 -9.74765 -9.39369 -9.23282 -8.98545 -8.14067 -7.49725 -7.30579 -6.88723 -4.42679 2.02881 2.50171 2.69293 3.24917 3.27050 3.36276 3.61376 3.77699 4.07611 4.57451 5.25355 5.27386 5.48728 5.65077 5.85554 6.11989 6.21300 6.28948 6.39083 6.57021 6.74841 7.07027 7.16701 7.34712 7.41024 7.62634 7.62969 7.95179 8.02274 8.48275 8.55232 8.64300 8.79712 10.08955 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.023878 B = 0.012901 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.325892 B = 2169.831668 C = 3046.993519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.088 3.912 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.252 1.252 6 H -0.296 1.296 7 C -0.413 4.413 8 H 0.120 0.880 9 C 0.074 3.926 10 C -0.023 4.023 11 F -0.145 7.145 12 C -0.108 4.108 13 C -0.224 4.224 14 C -0.058 4.058 15 C -0.117 4.117 16 C 0.148 3.852 17 C -0.272 4.272 18 C 0.037 3.963 19 N -0.500 5.500 20 H 0.430 0.570 21 N -0.257 5.257 22 H 0.285 0.715 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.139 0.861 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -3.780 -3.966 8.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.133 4.133 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.176 1.176 6 H -0.224 1.224 7 C -0.441 4.441 8 H 0.138 0.862 9 C 0.069 3.931 10 C -0.044 4.044 11 F -0.124 7.124 12 C -0.127 4.127 13 C -0.243 4.243 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.016 4.016 17 C -0.302 4.302 18 C -0.109 4.109 19 N -0.206 5.206 20 H 0.271 0.729 21 N -0.079 5.079 22 H 0.096 0.904 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.157 0.843 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.352 -3.360 -3.846 7.398 hybrid contribution 0.588 0.425 -0.389 0.823 sum 5.941 -2.935 -4.235 7.864 Atomic orbital electron populations 1.69675 1.08267 1.30338 1.33231 1.26241 0.94789 1.01746 0.90503 0.86519 0.80944 0.79937 0.78845 1.18253 1.17590 1.22405 1.19615 0.92408 0.97108 1.34962 0.86234 1.17655 0.93863 0.91286 0.90292 1.17883 0.87372 1.03196 0.95912 1.91187 1.69101 1.73625 1.78496 1.20683 0.91964 1.00092 1.00006 1.20095 0.98093 1.05300 1.00843 1.20663 0.94155 0.97263 0.95713 1.17615 0.92175 1.06130 0.96132 1.20678 0.90135 0.95814 0.94971 1.21431 1.00344 1.07685 1.00761 1.22281 0.85922 1.01609 1.01085 1.46722 1.07493 1.39513 1.26899 0.72850 1.78388 1.19643 1.10963 0.98930 0.90418 0.87512 0.87595 0.87621 0.84344 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.89 13.93 55.55 0.77 -21.12 15 2 C 0.09 2.43 5.00 -17.31 -0.09 2.34 15 3 Si 0.91 22.48 24.55 -169.99 -4.17 18.31 15 4 H -0.26 -6.28 6.09 56.52 0.34 -5.94 15 5 H -0.25 -6.35 7.11 56.52 0.40 -5.94 15 6 H -0.30 -6.98 7.11 56.52 0.40 -6.57 15 7 C -0.41 -11.58 8.03 -37.94 -0.30 -11.88 15 8 H 0.12 3.55 6.32 -52.49 -0.33 3.22 15 9 C 0.07 1.94 4.78 -106.49 -0.51 1.44 15 10 C -0.02 -0.59 5.63 -38.71 -0.22 -0.81 15 11 F -0.15 -3.75 12.41 2.25 0.03 -3.72 15 12 C -0.11 -2.32 9.99 -39.55 -0.40 -2.72 15 13 C -0.22 -4.42 10.03 -39.41 -0.40 -4.82 15 14 C -0.06 -1.18 9.56 -39.32 -0.38 -1.55 15 15 C -0.12 -2.77 5.93 -104.26 -0.62 -3.39 15 16 C 0.15 3.30 6.89 -82.81 -0.57 2.73 15 17 C -0.27 -4.83 10.18 -39.66 -0.40 -5.24 15 18 C 0.04 0.56 11.96 -17.25 -0.21 0.35 15 19 N -0.50 -8.56 7.35 30.42 0.22 -8.34 15 20 H 0.43 5.76 8.96 -182.62 -1.64 4.12 15 21 N -0.26 -5.89 9.72 33.39 0.32 -5.56 15 22 H 0.29 7.17 8.30 -40.82 -0.34 6.83 15 23 H 0.11 2.01 8.06 -52.49 -0.42 1.59 15 24 H 0.11 1.74 8.06 -52.49 -0.42 1.31 15 25 H 0.11 1.80 7.04 -52.48 -0.37 1.43 15 26 H 0.14 2.08 7.35 -52.49 -0.39 1.70 15 27 H 0.16 1.62 8.06 -52.49 -0.42 1.19 15 LS Contribution 238.36 15.07 3.59 3.59 Total: -1.00 -30.94 238.36 -6.50 -37.43 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.18 Total: 2.95 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -4.08 Total: -23.54 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 1.32 Total: -35.02 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.03 Total: -3.72 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.17 Total: 18.31 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.94 -6.50 -37.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245314050.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.759 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds