Wall clock time and date at job start Sun Mar 29 2020 21:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47358 * 2 1 4 4 H 1.09007 * 109.47131 * 304.48373 * 3 2 1 5 5 C 1.50700 * 109.47030 * 184.48547 * 3 2 1 6 6 H 1.08007 * 119.99727 * 240.00091 * 5 3 2 7 7 C 1.37875 * 120.00269 * 60.00184 * 5 3 2 8 8 N 1.31516 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00046 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47662 * 89.99630 * 9 7 5 11 11 H 1.48508 * 109.46959 * 209.99673 * 9 7 5 12 12 H 1.48504 * 109.46966 * 329.99340 * 9 7 5 13 13 N 1.46896 * 109.47330 * 64.48237 * 3 2 1 14 14 C 1.46896 * 111.00061 * 258.76669 * 13 3 2 15 15 H 1.08998 * 109.62108 * 37.17331 * 14 13 3 16 16 C 1.53181 * 109.54262 * 157.39765 * 14 13 3 17 17 C 1.53091 * 109.21319 * 176.81389 * 16 14 13 18 18 O 1.42916 * 109.41486 * 302.49158 * 17 16 14 19 19 C 1.42903 * 114.15347 * 61.05484 * 18 17 16 20 20 C 1.53088 * 109.41716 * 298.87992 * 19 18 17 21 21 H 1.08999 * 109.57594 * 177.54440 * 20 19 18 22 22 F 1.39897 * 109.52236 * 297.70345 * 20 19 18 23 23 H 1.09004 * 109.46455 * 298.98528 * 1 2 3 24 24 H 1.08999 * 109.47209 * 58.97679 * 1 2 3 25 25 H 1.08993 * 109.47374 * 178.98361 * 1 2 3 26 26 H 1.09006 * 109.46631 * 240.00228 * 2 1 3 27 27 H 1.08995 * 109.47512 * 120.00470 * 2 1 3 28 28 H 0.97001 * 119.99836 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99529 * 22.71875 * 13 3 2 30 30 H 1.09000 * 109.52160 * 296.75076 * 16 14 13 31 31 H 1.08999 * 109.52407 * 56.87784 * 16 14 13 32 32 H 1.09003 * 109.48396 * 62.40362 * 17 16 14 33 33 H 1.08999 * 109.48136 * 182.44281 * 17 16 14 34 34 H 1.08999 * 109.47571 * 178.89649 * 19 18 17 35 35 H 1.08996 * 109.47533 * 58.86403 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6126 1.9790 -0.8471 5 6 3.5430 1.4438 -0.1111 6 1 4.1417 1.8907 0.6689 7 6 4.1537 0.8747 -1.2084 8 7 3.4246 0.3301 -2.1579 9 14 6.0166 0.8757 -1.3457 10 1 6.5602 -0.3543 -0.7161 11 1 6.4074 0.9128 -2.7780 12 1 6.5634 2.0698 -0.6524 13 7 1.6408 2.1031 1.2498 14 6 0.4734 2.9691 1.0379 15 1 -0.2053 2.5007 0.3252 16 6 -0.2518 3.1864 2.3695 17 6 -1.4196 4.1530 2.1553 18 8 -0.9266 5.3816 1.6166 19 6 -0.2803 5.2467 0.3493 20 6 0.9333 4.3247 0.4925 21 1 1.4029 4.1851 -0.4812 22 9 1.8534 4.8969 1.3775 23 1 -0.3632 0.4980 0.8990 24 1 -0.3633 0.5296 -0.8806 25 1 -0.3634 -1.0274 -0.0182 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8543 -0.0707 -2.9297 29 1 1.4614 1.4254 1.9756 30 1 -0.6309 2.2331 2.7376 31 1 0.4413 3.6083 3.0973 32 1 -2.1332 3.7124 1.4591 33 1 -1.9123 4.3447 3.1085 34 1 0.0467 6.2268 0.0021 35 1 -0.9782 4.8199 -0.3710 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:18 Heat of formation + Delta-G solvation = -105.018851 kcal Electronic energy + Delta-G solvation = -17446.786291 eV Core-core repulsion = 14586.746769 eV Total energy + Delta-G solvation = -2860.039522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.85464 -38.84481 -36.54374 -33.30021 -31.55594 -30.62806 -29.40788 -26.59823 -23.74486 -23.46272 -22.37864 -19.79745 -19.60521 -16.70416 -16.18576 -16.09467 -15.46081 -15.13927 -14.94910 -14.42122 -14.00038 -13.42067 -13.25983 -13.05448 -12.57642 -12.22848 -12.04859 -11.60404 -11.38863 -11.22936 -11.14143 -10.86307 -10.63641 -10.32840 -10.14359 -10.09672 -9.80627 -9.76635 -9.29871 -9.03385 -8.34769 -7.26795 -5.99055 -4.01700 3.33096 3.39518 3.45595 3.89280 4.43501 4.77314 4.85772 4.87806 5.08692 5.21849 5.30520 5.39286 5.56680 5.64995 5.69518 5.85918 5.99831 6.03381 6.07850 6.11629 6.20458 6.30641 6.51308 6.72660 6.87077 7.12782 7.23462 7.30635 7.71032 7.90152 8.24590 8.48837 8.56871 9.07207 9.63611 11.07008 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.008240 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.182081 B = 3397.417691 C = 3891.243407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.217 3.783 4 H 0.027 0.973 5 C -0.490 4.490 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.062 3.938 15 H 0.053 0.947 16 C -0.158 4.158 17 C 0.062 3.938 18 O -0.378 6.378 19 C 0.036 3.964 20 C 0.074 3.926 21 H 0.091 0.909 22 F -0.197 7.197 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.036 0.964 26 H 0.101 0.899 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 4.471 4.602 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.110 3.890 4 H 0.045 0.955 5 C -0.529 4.529 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.049 4.049 15 H 0.071 0.929 16 C -0.196 4.196 17 C -0.015 4.015 18 O -0.296 6.296 19 C -0.042 4.042 20 C 0.037 3.963 21 H 0.109 0.891 22 F -0.178 7.178 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.119 0.881 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.980 5.079 4.473 11.245 hybrid contribution 0.378 -1.113 -0.445 1.257 sum -8.602 3.966 4.028 10.293 Atomic orbital electron populations 1.21922 0.99615 0.99550 0.99590 1.22236 0.91385 1.01921 1.03193 1.19267 0.95554 0.88687 0.85524 0.95518 1.21238 0.91038 1.35504 1.05071 0.91790 1.24960 0.98269 0.95619 0.95800 1.69865 1.34819 1.39410 1.09850 0.86523 0.85695 0.78421 0.76939 1.20859 1.21442 1.19837 1.60737 1.32435 1.25753 1.11291 1.22044 0.92825 0.94075 0.95964 0.92944 1.22356 0.98315 1.00027 0.98903 1.22599 0.94924 0.85138 0.98843 1.87923 1.75646 1.30579 1.35484 1.23279 0.93596 1.01240 0.86107 1.22191 0.88154 0.92536 0.93427 0.89111 1.92783 1.68196 1.85716 1.71099 0.94796 0.93836 0.94511 0.88074 0.94460 0.93112 0.85341 0.90985 0.89796 0.93344 0.88841 0.87968 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.72 37.16 0.32 -2.44 16 2 C -0.15 -3.34 5.08 -26.73 -0.14 -3.48 16 3 C 0.22 5.22 1.99 -68.87 -0.14 5.08 16 4 H 0.03 0.70 7.06 -51.93 -0.37 0.34 16 5 C -0.49 -13.43 8.84 -34.44 -0.30 -13.73 16 6 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.19 11.29 55.43 0.63 -24.56 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.67 -13.93 5.74 -100.76 -0.58 -14.51 16 14 C 0.06 1.08 1.41 -67.53 -0.09 0.99 16 15 H 0.05 0.91 6.22 -51.93 -0.32 0.59 16 16 C -0.16 -2.29 5.30 -26.59 -0.14 -2.43 16 17 C 0.06 0.79 6.85 37.20 0.25 1.04 16 18 O -0.38 -5.68 10.73 -35.23 -0.38 -6.06 16 19 C 0.04 0.51 6.59 37.20 0.25 0.75 16 20 C 0.07 1.32 3.68 -26.59 -0.10 1.22 16 21 H 0.09 1.73 7.63 -51.93 -0.40 1.33 16 22 F -0.20 -4.06 16.56 2.25 0.04 -4.03 16 23 H 0.03 0.56 6.53 -51.93 -0.34 0.22 16 24 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 2.61 5.96 -51.93 -0.31 2.30 16 27 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 6.42 7.62 -39.29 -0.30 6.12 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 278.99 15.07 4.20 4.20 Total: -1.00 -29.09 278.99 -6.66 -35.75 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.36 Total: 4.25 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.18 Total: -11.61 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.05 Total: -39.07 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.38 Total: -6.06 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.09 -6.66 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.268 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds