Wall clock time and date at job start Sun Mar 29 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 H 1.09002 * 109.47564 * 302.23582 * 3 2 1 5 5 C 1.50705 * 109.46629 * 62.23226 * 3 2 1 6 6 H 1.08003 * 119.99725 * 84.58344 * 5 3 2 7 7 C 1.37883 * 120.00050 * 264.57296 * 5 3 2 8 8 N 1.31510 * 119.99732 * 358.05822 * 7 5 3 9 9 Si 1.86795 * 119.99874 * 178.05595 * 7 5 3 10 10 H 1.48506 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47455 * 120.00286 * 9 7 5 12 12 H 1.48501 * 109.47127 * 240.00325 * 9 7 5 13 13 N 1.46891 * 109.47342 * 182.23135 * 3 2 1 14 14 C 1.47901 * 111.00018 * 299.94698 * 13 3 2 15 15 C 1.53998 * 107.05874 * 145.84303 * 14 13 3 16 16 C 1.54597 * 105.14063 * 358.77350 * 15 14 13 17 17 F 1.39896 * 110.72341 * 96.57915 * 16 15 14 18 18 C 1.52992 * 110.72419 * 219.68547 * 16 15 14 19 19 O 1.42900 * 109.47352 * 296.14901 * 18 16 15 20 20 C 1.48735 * 111.04423 * 57.52054 * 13 3 2 21 21 H 1.08997 * 109.47022 * 175.81619 * 1 2 3 22 22 H 1.08996 * 109.47002 * 295.81982 * 1 2 3 23 23 H 1.09003 * 109.47169 * 55.82102 * 1 2 3 24 24 H 1.09001 * 109.46895 * 240.00042 * 2 1 3 25 25 H 1.08995 * 109.46835 * 120.00499 * 2 1 3 26 26 H 0.97003 * 119.99674 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.92039 * 26.48736 * 14 13 3 28 28 H 1.09003 * 110.07981 * 265.28567 * 14 13 3 29 29 H 1.08996 * 110.30757 * 239.85741 * 15 14 13 30 30 H 1.08994 * 110.39138 * 117.73299 * 15 14 13 31 31 H 1.09000 * 109.47684 * 176.14745 * 18 16 15 32 32 H 1.09005 * 109.47380 * 56.14765 * 18 16 15 33 33 H 0.96704 * 114.00463 * 180.02562 * 19 18 16 34 34 H 1.09000 * 110.83443 * 81.96223 * 20 13 3 35 35 H 1.09004 * 110.58431 * 318.77364 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6444 1.9678 -0.8693 5 6 1.5834 2.1367 1.2573 6 1 2.1559 2.0368 2.1676 7 6 0.4348 2.8994 1.2453 8 7 -0.2414 3.0523 0.1277 9 14 -0.1609 3.7154 2.8165 10 1 0.7699 3.3899 3.9269 11 1 -0.2066 5.1870 2.6235 12 1 -1.5199 3.2173 3.1485 13 7 3.5080 1.4429 -0.0539 14 6 4.0814 0.7383 1.1132 15 6 5.3640 0.0354 0.6311 16 6 5.4595 0.3596 -0.8774 17 9 6.3051 1.4524 -1.0964 18 6 5.9409 -0.8611 -1.6641 19 8 7.2685 -1.1976 -1.2561 20 6 3.9986 0.7128 -1.2533 21 1 -0.3633 -1.0249 -0.0750 22 1 -0.3633 0.4476 0.9250 23 1 -0.3634 0.5773 -0.8502 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 -1.0492 3.5892 0.1192 27 1 3.3717 0.0003 1.4870 28 1 4.3230 1.4528 1.9001 29 1 5.2851 -1.0411 0.7825 30 1 6.2334 0.4282 1.1583 31 1 5.9355 -0.6320 -2.7298 32 1 5.2768 -1.7034 -1.4703 33 1 7.6387 -1.9640 -1.7150 34 1 3.9723 1.3535 -2.1348 35 1 3.4137 -0.1924 -1.4168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:17 Heat of formation + Delta-G solvation = -93.917831 kcal Electronic energy + Delta-G solvation = -17334.046365 eV Core-core repulsion = 14474.488218 eV Total energy + Delta-G solvation = -2859.558146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.12688 -38.48328 -36.72224 -34.05995 -31.54302 -30.11442 -28.94316 -26.58360 -24.40681 -23.09756 -21.65016 -19.96796 -19.02500 -17.37248 -16.36982 -15.96391 -15.66318 -14.66563 -14.35482 -14.15301 -14.03847 -13.55029 -13.37619 -12.85635 -12.63977 -12.24675 -12.05678 -11.47618 -11.11924 -10.93221 -10.82544 -10.64544 -10.43742 -10.39984 -10.34262 -10.27190 -10.04527 -9.69605 -9.41763 -8.87621 -8.46553 -7.22268 -6.03561 -4.04808 3.29382 3.38219 3.42096 3.97241 4.41877 4.59144 4.77246 4.89218 5.11346 5.13712 5.38488 5.39205 5.55364 5.69435 5.91305 6.10469 6.16355 6.24535 6.28637 6.42740 6.58497 6.59109 6.71410 6.93198 7.14788 7.20178 7.39310 7.48473 7.60403 7.81066 7.97957 8.29750 8.51346 9.02046 9.57894 11.05305 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.040973 B = 0.007285 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.212031 B = 3842.655979 C = 4089.672627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.143 4.143 3 C 0.192 3.808 4 H 0.074 0.926 5 C -0.497 4.497 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.501 5.501 14 C 0.040 3.960 15 C -0.143 4.143 16 C 0.119 3.881 17 F -0.195 7.195 18 C 0.063 3.937 19 O -0.564 6.564 20 C 0.011 3.989 21 H 0.013 0.987 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.025 0.975 25 H 0.042 0.958 26 H 0.260 0.740 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.377 0.623 34 H 0.084 0.916 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -9.156 -3.048 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.183 4.183 3 C 0.086 3.914 4 H 0.092 0.908 5 C -0.535 4.535 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.224 5.224 14 C -0.088 4.088 15 C -0.181 4.181 16 C 0.100 3.900 17 F -0.175 7.175 18 C -0.016 4.016 19 O -0.369 6.369 20 C -0.118 4.118 21 H 0.032 0.968 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.103 0.897 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.839 -7.945 -2.732 11.491 hybrid contribution -0.597 -0.806 0.421 1.088 sum 7.242 -8.751 -2.312 11.592 Atomic orbital electron populations 1.21405 0.95487 0.97021 1.03639 1.22267 0.97327 1.01162 0.97532 1.19778 0.80437 0.91039 1.00157 0.90839 1.20969 1.07854 1.29638 0.95087 0.92489 1.24888 0.96868 0.95622 0.96042 1.69931 1.17221 1.39972 1.25514 0.86557 0.78487 0.79325 0.83746 1.19805 1.20999 1.21132 1.65376 1.12407 1.46053 0.98577 1.22775 0.93362 0.96839 0.95782 1.22987 1.00300 1.01016 0.93828 1.21810 0.89404 0.82316 0.96516 1.92839 1.72599 1.56276 1.95788 1.22711 0.84314 0.96558 0.98024 1.86545 1.29907 1.52923 1.67546 1.23839 0.91243 0.98946 0.97755 0.96826 0.91917 0.92527 0.95637 0.93932 0.92998 0.92856 0.90818 0.90815 0.90361 0.92577 0.91941 0.77596 0.89735 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 8.77 37.16 0.33 -2.25 16 2 C -0.14 -3.07 4.79 -26.73 -0.13 -3.20 16 3 C 0.19 4.65 2.13 -68.87 -0.15 4.51 16 4 H 0.07 2.02 7.26 -51.93 -0.38 1.64 16 5 C -0.50 -13.21 7.42 -34.44 -0.26 -13.47 16 6 H 0.06 1.53 6.91 -52.48 -0.36 1.17 16 7 C 0.07 1.83 4.38 -17.82 -0.08 1.76 16 8 N -0.89 -24.60 11.79 55.43 0.65 -23.95 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.50 -10.99 5.31 -223.71 -1.19 -12.18 16 14 C 0.04 0.79 5.26 -2.75 -0.01 0.78 16 15 C -0.14 -2.37 6.12 -25.37 -0.16 -2.52 16 16 C 0.12 1.98 1.43 -88.76 -0.13 1.85 16 17 F -0.19 -3.79 16.93 2.25 0.04 -3.75 16 18 C 0.06 0.80 6.16 37.15 0.23 1.02 16 19 O -0.56 -7.00 13.40 -35.23 -0.47 -7.48 16 20 C 0.01 0.20 5.66 -1.79 -0.01 0.19 16 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 22 H 0.06 1.51 6.74 -51.93 -0.35 1.16 16 23 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16 24 H 0.03 0.49 5.91 -51.93 -0.31 0.19 16 25 H 0.04 0.89 6.08 -51.93 -0.32 0.58 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.05 1.05 5.51 -51.93 -0.29 0.77 16 28 H 0.07 1.51 7.94 -51.93 -0.41 1.10 16 29 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 30 H 0.08 1.30 8.12 -51.93 -0.42 0.87 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.38 2.60 9.12 45.56 0.42 3.01 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.04 5.45 -51.93 -0.28 0.75 16 LS Contribution 276.05 15.07 4.16 4.16 Total: -1.00 -29.83 276.05 -6.53 -36.36 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.34 Total: 2.09 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.36 Total: -11.34 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.53 Total: -36.13 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.47 Total: -7.48 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.83 -6.53 -36.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.560 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds