Wall clock time and date at job start Sun Mar 29 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 H 1.09002 * 109.47564 * 302.23582 * 3 2 1 5 5 C 1.50705 * 109.46629 * 62.23226 * 3 2 1 6 6 H 1.08003 * 119.99725 * 84.58344 * 5 3 2 7 7 C 1.37883 * 120.00050 * 264.57296 * 5 3 2 8 8 N 1.31510 * 119.99732 * 358.05822 * 7 5 3 9 9 Si 1.86795 * 119.99874 * 178.05595 * 7 5 3 10 10 H 1.48506 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47455 * 120.00286 * 9 7 5 12 12 H 1.48501 * 109.47127 * 240.00325 * 9 7 5 13 13 N 1.46891 * 109.47342 * 182.23135 * 3 2 1 14 14 C 1.47901 * 111.00018 * 299.94698 * 13 3 2 15 15 C 1.53998 * 107.05874 * 145.84303 * 14 13 3 16 16 C 1.54597 * 105.14063 * 358.77350 * 15 14 13 17 17 F 1.39896 * 110.72341 * 96.57915 * 16 15 14 18 18 C 1.52992 * 110.72419 * 219.68547 * 16 15 14 19 19 O 1.42900 * 109.47352 * 296.14901 * 18 16 15 20 20 C 1.48735 * 111.04423 * 57.52054 * 13 3 2 21 21 H 1.08997 * 109.47022 * 175.81619 * 1 2 3 22 22 H 1.08996 * 109.47002 * 295.81982 * 1 2 3 23 23 H 1.09003 * 109.47169 * 55.82102 * 1 2 3 24 24 H 1.09001 * 109.46895 * 240.00042 * 2 1 3 25 25 H 1.08995 * 109.46835 * 120.00499 * 2 1 3 26 26 H 0.97003 * 119.99674 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.92039 * 26.48736 * 14 13 3 28 28 H 1.09003 * 110.07981 * 265.28567 * 14 13 3 29 29 H 1.08996 * 110.30757 * 239.85741 * 15 14 13 30 30 H 1.08994 * 110.39138 * 117.73299 * 15 14 13 31 31 H 1.09000 * 109.47684 * 176.14745 * 18 16 15 32 32 H 1.09005 * 109.47380 * 56.14765 * 18 16 15 33 33 H 0.96704 * 114.00463 * 180.02562 * 19 18 16 34 34 H 1.09000 * 110.83443 * 81.96223 * 20 13 3 35 35 H 1.09004 * 110.58431 * 318.77364 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6444 1.9678 -0.8693 5 6 1.5834 2.1367 1.2573 6 1 2.1559 2.0368 2.1676 7 6 0.4348 2.8994 1.2453 8 7 -0.2414 3.0523 0.1277 9 14 -0.1609 3.7154 2.8165 10 1 0.7699 3.3899 3.9269 11 1 -0.2066 5.1870 2.6235 12 1 -1.5199 3.2173 3.1485 13 7 3.5080 1.4429 -0.0539 14 6 4.0814 0.7383 1.1132 15 6 5.3640 0.0354 0.6311 16 6 5.4595 0.3596 -0.8774 17 9 6.3051 1.4524 -1.0964 18 6 5.9409 -0.8611 -1.6641 19 8 7.2685 -1.1976 -1.2561 20 6 3.9986 0.7128 -1.2533 21 1 -0.3633 -1.0249 -0.0750 22 1 -0.3633 0.4476 0.9250 23 1 -0.3634 0.5773 -0.8502 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 -1.0492 3.5892 0.1192 27 1 3.3717 0.0003 1.4870 28 1 4.3230 1.4528 1.9001 29 1 5.2851 -1.0411 0.7825 30 1 6.2334 0.4282 1.1583 31 1 5.9355 -0.6320 -2.7298 32 1 5.2768 -1.7034 -1.4703 33 1 7.6387 -1.9640 -1.7150 34 1 3.9723 1.3535 -2.1348 35 1 3.4137 -0.1924 -1.4168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:17 Heat of formation + Delta-G solvation = -116.518061 kcal Electronic energy + Delta-G solvation = -17335.026384 eV Core-core repulsion = 14474.488218 eV Total energy + Delta-G solvation = -2860.538166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.53562 -40.03853 -37.74367 -35.75835 -33.42756 -31.62721 -30.36802 -28.33926 -25.88495 -24.80753 -23.25377 -21.30012 -20.78523 -18.34365 -18.16997 -17.36733 -17.21622 -16.28722 -15.87796 -15.64851 -15.44548 -15.14188 -14.87250 -14.35696 -14.24981 -13.68003 -13.56330 -13.13202 -12.89916 -12.78080 -12.52560 -12.30334 -12.18549 -12.00696 -11.81089 -11.56841 -11.46063 -11.23202 -10.98135 -10.80899 -10.50908 -8.87952 -8.08733 -6.14847 1.39458 1.43270 1.52641 2.43903 2.93351 3.15171 3.34189 3.57021 3.60844 3.85572 4.06070 4.23110 4.32511 4.42160 4.53902 4.57610 4.61454 4.68335 4.81331 4.84870 5.01032 5.07454 5.20889 5.24060 5.34887 5.44396 5.67054 5.72898 5.82495 6.07499 6.52192 6.66713 6.88788 6.96547 7.50260 8.99488 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.040973 B = 0.007285 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.212031 B = 3842.655979 C = 4089.672627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.198 3.802 4 H 0.034 0.966 5 C -0.509 4.509 6 H 0.048 0.952 7 C 0.026 3.974 8 N -0.913 5.913 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.532 5.532 14 C 0.043 3.957 15 C -0.133 4.133 16 C 0.111 3.889 17 F -0.215 7.215 18 C 0.071 3.929 19 O -0.583 6.583 20 C 0.012 3.988 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.260 0.740 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.402 0.598 34 H 0.077 0.923 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 -11.132 -3.100 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.174 4.174 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.547 4.547 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.255 5.255 14 C -0.085 4.085 15 C -0.171 4.171 16 C 0.093 3.907 17 F -0.196 7.196 18 C -0.007 4.007 19 O -0.392 6.392 20 C -0.116 4.116 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.095 0.905 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.655 -9.944 -2.791 13.475 hybrid contribution -0.785 -0.186 0.415 0.907 sum 7.870 -10.130 -2.375 13.046 Atomic orbital electron populations 1.21290 0.95899 0.98341 1.01208 1.22112 0.96819 0.99454 0.99025 1.19492 0.81986 0.92116 0.97251 0.94835 1.21222 1.07801 1.29933 0.95779 0.93409 1.25503 0.97144 0.96331 0.98433 1.70041 1.17534 1.40721 1.26959 0.85715 0.78177 0.78171 0.80800 1.19609 1.21188 1.20444 1.65125 1.11096 1.48398 1.00902 1.22714 0.94845 0.96335 0.94635 1.22931 0.98214 1.02291 0.93706 1.22037 0.88208 0.83345 0.97156 1.92798 1.73110 1.57772 1.95923 1.22578 0.85090 0.95223 0.97855 1.86473 1.29735 1.54630 1.68377 1.23836 0.92744 0.99109 0.95891 0.93528 0.94615 0.94636 0.93108 0.93145 0.93121 0.92898 0.92838 0.87910 0.90598 0.91155 0.89278 0.74673 0.90495 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 8.77 71.98 0.63 -4.08 16 2 C -0.13 -5.59 4.79 30.60 0.15 -5.44 16 3 C 0.20 9.69 2.13 44.17 0.09 9.79 16 4 H 0.03 1.90 7.26 -2.39 -0.02 1.88 16 5 C -0.51 -27.47 7.42 25.60 0.19 -27.28 16 6 H 0.05 2.61 6.91 -2.91 -0.02 2.59 16 7 C 0.03 1.40 4.38 84.66 0.37 1.77 16 8 N -0.91 -51.70 11.79 21.45 0.25 -51.45 16 9 Si 0.94 43.82 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.53 -23.28 5.31 -861.69 -4.58 -27.85 16 14 C 0.04 1.64 5.26 86.45 0.46 2.10 16 15 C -0.13 -4.10 6.12 31.47 0.19 -3.91 16 16 C 0.11 3.47 1.43 -9.59 -0.01 3.45 16 17 F -0.22 -8.16 16.93 44.97 0.76 -7.40 16 18 C 0.07 1.53 6.16 71.98 0.44 1.97 16 19 O -0.58 -12.30 13.40 -148.98 -2.00 -14.30 16 20 C 0.01 0.44 5.66 86.61 0.49 0.93 16 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.03 1.70 6.74 -2.39 -0.02 1.68 16 23 H 0.03 1.64 7.89 -2.39 -0.02 1.62 16 24 H 0.05 1.84 5.91 -2.39 -0.01 1.83 16 25 H 0.05 2.01 6.08 -2.39 -0.01 2.00 16 26 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.05 2.02 5.51 -2.39 -0.01 2.00 16 28 H 0.05 2.22 7.94 -2.39 -0.02 2.20 16 29 H 0.10 2.58 7.84 -2.39 -0.02 2.56 16 30 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 33 H 0.40 3.90 9.12 -74.05 -0.68 3.23 16 34 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.08 2.48 5.45 -2.38 -0.01 2.46 16 Total: -1.00 -64.94 276.05 -0.12 -65.06 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.41 Total: 10.81 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.00 Total: -20.72 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.32 Total: -79.30 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -2.00 Total: -14.30 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.76 Total: -7.40 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.94 -0.12 -65.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.456 kcal (2) G-P(sol) polarization free energy of solvation -64.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds