Wall clock time and date at job start Sun Mar 29 2020 21:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46861 * 2 1 4 4 H 1.09005 * 109.46507 * 180.52935 * 3 2 1 5 5 C 1.50694 * 109.47107 * 300.52801 * 3 2 1 6 6 H 1.08000 * 120.00015 * 120.00562 * 5 3 2 7 7 C 1.37876 * 120.00449 * 299.72932 * 5 3 2 8 8 N 1.31517 * 119.99583 * 0.27362 * 7 5 3 9 9 Si 1.86800 * 120.00387 * 180.27709 * 7 5 3 10 10 H 1.48494 * 109.46829 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47281 * 119.99685 * 9 7 5 12 12 H 1.48495 * 109.46900 * 239.99646 * 9 7 5 13 13 N 1.46892 * 109.47196 * 60.53297 * 3 2 1 14 14 C 1.48534 * 111.00339 * 59.78767 * 13 3 2 15 15 C 1.54937 * 103.23074 * 159.72025 * 14 13 3 16 16 C 1.54598 * 102.92124 * 322.58786 * 15 14 13 17 17 F 1.39897 * 110.39248 * 262.99771 * 16 15 14 18 18 C 1.52996 * 110.31118 * 140.87010 * 16 15 14 19 19 O 1.42905 * 109.47023 * 64.28535 * 18 16 15 20 20 C 1.47899 * 111.00106 * 177.18249 * 13 3 2 21 21 H 1.09005 * 109.46771 * 305.41422 * 1 2 3 22 22 H 1.08999 * 109.46948 * 65.41078 * 1 2 3 23 23 H 1.08992 * 109.47238 * 185.41696 * 1 2 3 24 24 H 1.08994 * 109.46868 * 239.99984 * 2 1 3 25 25 H 1.08997 * 109.46673 * 119.99725 * 2 1 3 26 26 H 0.97002 * 119.99625 * 180.02562 * 8 7 5 27 27 H 1.09004 * 110.66628 * 278.15653 * 14 13 3 28 28 H 1.08994 * 110.66580 * 41.28624 * 14 13 3 29 29 H 1.08995 * 110.72809 * 204.22595 * 15 14 13 30 30 H 1.08997 * 110.72211 * 80.93839 * 15 14 13 31 31 H 1.09000 * 109.47381 * 184.28580 * 18 16 15 32 32 H 1.08999 * 109.47141 * 304.28507 * 18 16 15 33 33 H 0.96704 * 113.99741 * 179.97438 * 19 18 16 34 34 H 1.09007 * 109.91853 * 333.51125 * 20 13 3 35 35 H 1.09002 * 109.91638 * 94.80094 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 -0.0095 5 6 1.5270 2.1567 -1.2238 6 1 0.9070 3.0345 -1.1166 7 6 1.8537 1.6928 -2.4804 8 7 2.6087 0.6239 -2.6110 9 14 1.2242 2.5826 -3.9975 10 1 0.4013 3.7469 -3.5825 11 1 2.3754 3.0535 -4.8086 12 1 0.3949 1.6543 -4.8072 13 7 1.5609 2.1313 1.2058 14 6 2.0437 1.4511 2.4347 15 6 1.9159 2.5485 3.5209 16 6 2.3175 3.8343 2.7623 17 9 3.6638 4.1362 2.9934 18 6 1.4303 5.0040 3.1929 19 8 1.6553 5.2889 4.5750 20 6 2.0902 3.5106 1.2740 21 1 -0.3633 0.5956 0.8376 22 1 -0.3633 0.4276 -0.9345 23 1 -0.3633 -1.0230 0.0970 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.8389 0.2978 -3.4950 27 1 1.4113 0.5964 2.6751 28 1 3.0827 1.1422 2.3205 29 1 2.6023 2.3569 4.3456 30 1 0.8892 2.6176 3.8804 31 1 1.6736 5.8833 2.5964 32 1 0.3834 4.7408 3.0418 33 1 1.1249 6.0217 4.9169 34 1 3.0339 3.5734 0.7320 35 1 1.3677 4.2071 0.8487 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:21 Heat of formation + Delta-G solvation = -120.197167 kcal Electronic energy + Delta-G solvation = -17347.130897 eV Core-core repulsion = 14486.433193 eV Total energy + Delta-G solvation = -2860.697704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.69863 -39.89042 -37.72766 -35.91487 -33.46066 -31.38300 -30.57199 -28.00205 -26.34763 -24.73413 -23.10320 -21.26342 -20.81006 -18.37029 -18.14112 -17.37666 -17.22447 -16.55446 -16.04355 -15.73414 -15.34613 -14.94069 -14.72798 -14.35894 -14.03137 -13.82888 -13.54878 -13.28682 -12.92513 -12.81649 -12.50329 -12.39622 -12.29573 -11.86821 -11.82101 -11.57980 -11.49585 -11.23671 -10.98740 -10.82389 -10.49408 -9.14374 -8.09520 -6.19948 1.40739 1.43277 1.53873 2.42456 2.95827 3.19292 3.25816 3.43744 3.51218 3.76759 4.11958 4.25401 4.33033 4.50983 4.57069 4.62649 4.74074 4.77995 4.82185 4.87992 4.97483 5.03033 5.19592 5.27189 5.38013 5.46532 5.69368 5.74379 5.85281 6.18864 6.31319 6.56822 6.87860 6.91297 7.47973 8.96696 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.008053 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.166471 B = 3476.315601 C = 3891.732699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.107 4.107 3 C 0.214 3.786 4 H -0.045 1.045 5 C -0.504 4.504 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.501 5.501 14 C 0.028 3.972 15 C -0.119 4.119 16 C 0.100 3.900 17 F -0.221 7.221 18 C 0.075 3.925 19 O -0.582 6.582 20 C 0.036 3.964 21 H 0.058 0.942 22 H 0.033 0.967 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.260 0.740 27 H 0.094 0.906 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.402 0.598 34 H 0.029 0.971 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 6.250 10.885 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C 0.107 3.893 4 H -0.028 1.028 5 C -0.542 4.542 6 H 0.077 0.923 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.226 5.226 14 C -0.100 4.100 15 C -0.157 4.157 16 C 0.081 3.919 17 F -0.202 7.202 18 C -0.004 4.004 19 O -0.391 6.391 20 C -0.093 4.093 21 H 0.077 0.923 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.047 0.953 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.942 5.656 10.651 13.033 hybrid contribution 0.917 0.599 -1.214 1.635 sum -4.026 6.255 9.437 12.016 Atomic orbital electron populations 1.21323 0.95291 0.98855 1.01082 1.21413 0.96865 0.96944 0.99281 1.19286 0.90302 0.92350 0.87400 1.02767 1.21262 1.30644 1.11856 0.90468 0.92263 1.25658 0.95444 0.95795 1.01739 1.70032 1.38212 1.24345 1.23540 0.85557 0.77995 0.78867 0.79568 1.18804 1.21219 1.20688 1.64901 1.54577 1.00795 1.02307 1.23301 0.97801 0.98255 0.90617 1.22959 1.04240 0.91532 0.97001 1.22112 0.76602 0.97378 0.95826 1.92807 1.36925 1.94676 1.95751 1.22584 0.98783 0.95750 0.83267 1.86446 1.69953 1.58312 1.24374 1.23155 0.99477 0.93830 0.92834 0.92338 0.94796 0.94240 0.92145 0.95342 0.93108 0.88787 0.96221 0.89712 0.87349 0.91737 0.89327 0.74690 0.95265 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.47 71.98 0.68 -3.88 16 2 C -0.11 -5.07 5.22 30.60 0.16 -4.91 16 3 C 0.21 10.75 1.44 44.17 0.06 10.82 16 4 H -0.05 -2.63 7.99 -2.38 -0.02 -2.65 16 5 C -0.50 -26.95 6.94 25.60 0.18 -26.77 16 6 H 0.06 3.13 7.43 -2.91 -0.02 3.11 16 7 C 0.01 0.66 5.31 84.65 0.45 1.11 16 8 N -0.92 -53.00 11.33 21.45 0.24 -52.75 16 9 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 N -0.50 -20.74 4.26 -862.24 -3.68 -24.41 16 14 C 0.03 1.01 5.40 86.65 0.47 1.47 16 15 C -0.12 -3.52 6.20 31.80 0.20 -3.33 16 16 C 0.10 3.20 1.44 -9.91 -0.01 3.18 16 17 F -0.22 -8.26 16.78 44.97 0.75 -7.50 16 18 C 0.07 1.77 5.90 71.98 0.43 2.20 16 19 O -0.58 -12.82 13.37 -148.98 -1.99 -14.81 16 20 C 0.04 1.39 5.32 86.45 0.46 1.85 16 21 H 0.06 2.30 7.46 -2.38 -0.02 2.28 16 22 H 0.03 1.55 7.40 -2.39 -0.02 1.53 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 3.27 6.09 -2.39 -0.01 3.26 16 25 H 0.03 1.23 6.90 -2.39 -0.02 1.21 16 26 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.09 3.08 7.65 -2.38 -0.02 3.06 16 28 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 29 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 30 H 0.11 2.73 7.84 -2.39 -0.02 2.71 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.40 4.38 9.12 -74.05 -0.68 3.70 16 34 H 0.03 1.30 7.57 -2.38 -0.02 1.29 16 35 H 0.09 3.40 7.53 -2.39 -0.02 3.38 16 Total: -1.00 -64.01 281.07 0.82 -63.19 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.40 Total: 9.29 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 3.07 Total: -18.26 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.43 Total: -77.17 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.99 Total: -14.81 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.75 Total: -7.50 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -64.01 0.82 -63.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.005 kcal (2) G-P(sol) polarization free energy of solvation -64.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds