Wall clock time and date at job start Sun Mar 29 2020 21:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46953 * 2 1 4 4 H 1.08999 * 109.46827 * 178.00246 * 3 2 1 5 5 C 1.50705 * 109.46821 * 58.00463 * 3 2 1 6 6 H 1.07995 * 119.99556 * 240.00008 * 5 3 2 7 7 C 1.37874 * 120.00132 * 59.99580 * 5 3 2 8 8 N 1.31512 * 120.00040 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99948 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46774 * 120.00323 * 9 7 5 12 12 H 1.48491 * 109.47174 * 240.00680 * 9 7 5 13 13 N 1.46900 * 109.47224 * 298.00532 * 3 2 1 14 14 C 1.47844 * 110.99982 * 300.30835 * 13 3 2 15 15 C 1.54903 * 104.79533 * 213.63634 * 14 13 3 16 16 C 1.55141 * 101.65541 * 37.07000 * 15 14 13 17 17 F 1.39901 * 110.70607 * 82.72510 * 16 15 14 18 18 C 1.52990 * 110.85516 * 205.89617 * 16 15 14 19 19 O 1.42904 * 109.47064 * 293.68020 * 18 16 15 20 20 C 1.47443 * 111.00170 * 179.46351 * 13 3 2 21 21 H 1.09004 * 109.47216 * 54.49378 * 1 2 3 22 22 H 1.08996 * 109.47541 * 294.48842 * 1 2 3 23 23 H 1.08998 * 109.46696 * 174.48719 * 1 2 3 24 24 H 1.09000 * 109.47347 * 119.99749 * 2 1 3 25 25 H 1.09003 * 109.47061 * 240.00126 * 2 1 3 26 26 H 0.96996 * 119.99848 * 179.97438 * 8 7 5 27 27 H 1.09011 * 110.37190 * 332.46619 * 14 13 3 28 28 H 1.08998 * 110.37948 * 94.80267 * 14 13 3 29 29 H 1.08998 * 110.99400 * 278.97555 * 15 14 13 30 30 H 1.08999 * 110.99006 * 155.15868 * 15 14 13 31 31 H 1.09002 * 109.47647 * 53.68398 * 18 16 15 32 32 H 1.09004 * 109.47459 * 173.68235 * 18 16 15 33 33 H 0.96703 * 114.00138 * 180.02562 * 19 18 16 34 34 H 1.08999 * 109.88646 * 242.66641 * 20 13 3 35 35 H 1.08999 * 109.88473 * 3.68535 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4428 0.0358 5 6 1.4976 2.1671 1.2050 6 1 0.8804 3.0438 1.0754 7 6 1.7892 1.7106 2.4729 8 7 2.5411 0.6432 2.6308 9 14 1.1175 2.6091 3.9666 10 1 0.3063 3.7709 3.5220 11 1 0.2660 1.6853 4.7583 12 1 2.2456 3.0850 4.8067 13 7 1.5901 2.1210 -1.2228 14 6 2.0980 1.4322 -2.4284 15 6 2.3397 2.5639 -3.4582 16 6 2.8654 3.7068 -2.5504 17 9 4.2340 3.5532 -2.3042 18 6 2.5801 5.0738 -3.1754 19 8 3.3444 5.2182 -4.3742 20 6 2.0532 3.5206 -1.2515 21 1 -0.3634 0.5969 -0.8366 22 1 -0.3634 0.4259 0.9352 23 1 -0.3632 -1.0229 -0.0987 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.7466 0.3223 3.5227 27 1 3.0320 0.9162 -2.2054 28 1 1.3554 0.7287 -2.8048 29 1 1.4094 2.8510 -3.9483 30 1 3.0911 2.2707 -4.1913 31 1 1.5185 5.1518 -3.4097 32 1 2.8556 5.8596 -2.4720 33 1 3.2133 6.0638 -4.8248 34 1 1.1966 4.1946 -1.2498 35 1 2.6836 3.7203 -0.3851 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:24 Heat of formation + Delta-G solvation = -98.565652 kcal Electronic energy + Delta-G solvation = -17405.308564 eV Core-core repulsion = 14545.548873 eV Total energy + Delta-G solvation = -2859.759691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -47.19779 -38.27455 -36.66219 -34.14006 -31.52424 -29.80124 -29.18436 -26.05729 -24.93375 -22.98778 -21.35844 -19.97629 -18.95570 -17.38370 -16.05766 -15.92870 -15.77006 -14.97361 -14.48719 -14.09649 -13.76829 -13.57843 -13.05764 -12.67231 -12.42259 -12.17845 -11.91568 -11.75697 -11.25765 -11.07040 -10.93173 -10.61104 -10.52231 -10.33161 -10.28861 -9.94515 -9.93696 -9.64090 -9.37289 -8.83417 -8.43174 -7.24477 -6.00553 -4.04218 3.29048 3.37316 3.40676 4.03793 4.40116 4.67460 4.75729 4.86126 5.02748 5.24826 5.32882 5.41452 5.59715 5.73971 5.92600 6.14822 6.31664 6.42478 6.44779 6.51724 6.62625 6.67781 6.79371 7.12954 7.24665 7.41919 7.51992 7.62468 7.72437 7.83925 8.07544 8.32140 8.53481 9.00603 9.59566 11.06210 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.008322 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.682620 B = 3363.582674 C = 3824.972152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.210 3.790 4 H 0.001 0.999 5 C -0.498 4.498 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.516 5.516 14 C 0.041 3.959 15 C -0.138 4.138 16 C 0.094 3.906 17 F -0.200 7.200 18 C 0.067 3.933 19 O -0.566 6.566 20 C 0.040 3.960 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.377 0.623 34 H 0.079 0.921 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 6.066 -10.298 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.103 3.897 4 H 0.019 0.981 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.240 5.240 14 C -0.087 4.087 15 C -0.176 4.176 16 C 0.074 3.926 17 F -0.181 7.181 18 C -0.012 4.012 19 O -0.371 6.371 20 C -0.089 4.089 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.108 0.892 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.224 0.776 34 H 0.097 0.903 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.865 5.314 -9.941 11.425 hybrid contribution 0.474 0.977 0.811 1.355 sum -1.391 6.291 -9.130 11.175 Atomic orbital electron populations 1.21454 0.97230 0.97223 1.01806 1.21529 0.95317 0.97951 0.99983 1.19529 0.93326 0.91320 0.85485 0.98101 1.21069 1.31062 1.11926 0.89650 0.92036 1.24902 0.95235 0.95107 0.98864 1.69893 1.37569 1.23248 1.22284 0.86521 0.78702 0.79779 0.82914 1.19766 1.21039 1.21191 1.63790 1.57008 1.00099 1.03130 1.23018 0.98742 0.96095 0.90836 1.23191 1.01589 0.95135 0.97716 1.22365 0.77640 0.94871 0.97675 1.92846 1.33093 1.96696 1.95417 1.22662 0.95363 0.96481 0.86710 1.86535 1.69487 1.41807 1.39297 1.23204 0.97742 0.93599 0.94327 0.93568 0.92634 0.96672 0.89160 0.96813 0.93034 0.93900 0.90663 0.89728 0.90405 0.91653 0.92567 0.77625 0.90321 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.46 37.16 0.35 -2.30 16 2 C -0.11 -2.63 5.27 -26.73 -0.14 -2.77 16 3 C 0.21 5.23 1.36 -68.86 -0.09 5.14 16 4 H 0.00 0.04 8.09 -51.93 -0.42 -0.38 16 5 C -0.50 -13.28 6.41 -34.44 -0.22 -13.51 16 6 H 0.06 1.64 7.41 -52.49 -0.39 1.25 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.24 11.34 55.43 0.63 -24.61 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.52 -10.92 4.25 -224.67 -0.95 -11.88 16 14 C 0.04 0.76 5.37 -2.30 -0.01 0.75 16 15 C -0.14 -2.20 6.19 -24.59 -0.15 -2.35 16 16 C 0.09 1.60 1.31 -88.80 -0.12 1.49 16 17 F -0.20 -4.04 16.89 2.25 0.04 -4.01 16 18 C 0.07 0.87 6.14 37.15 0.23 1.10 16 19 O -0.57 -7.23 13.43 -35.23 -0.47 -7.70 16 20 C 0.04 0.78 5.45 -2.84 -0.02 0.76 16 21 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 22 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.09 2.42 6.13 -51.93 -0.32 2.10 16 25 H 0.01 0.30 7.00 -51.93 -0.36 -0.07 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.04 0.86 7.61 -51.92 -0.40 0.47 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.38 2.73 9.12 45.56 0.42 3.14 16 34 H 0.08 1.36 7.82 -51.93 -0.41 0.96 16 35 H 0.08 1.77 7.00 -51.93 -0.36 1.41 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -30.16 281.09 -6.49 -36.65 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.68 Total: 1.34 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.27 Total: -10.14 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.33 Total: -36.48 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.47 Total: -7.70 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.16 -6.49 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.913 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds