Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.46965 * 2 1 4 4 H 1.09005 * 109.46632 * 304.17701 * 3 2 1 5 5 C 1.50702 * 109.47070 * 184.17957 * 3 2 1 6 6 H 1.08000 * 120.00216 * 239.99670 * 5 3 2 7 7 C 1.37883 * 120.00054 * 59.99755 * 5 3 2 8 8 N 1.31516 * 119.99954 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99836 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47325 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47302 * 119.99643 * 9 7 5 12 12 H 1.48500 * 109.47301 * 239.99811 * 9 7 5 13 13 N 1.46896 * 109.47308 * 64.17718 * 3 2 1 14 14 C 1.46849 * 111.00228 * 65.63403 * 13 3 2 15 15 C 1.53032 * 109.52366 * 185.83720 * 14 13 3 16 16 C 1.53112 * 109.28045 * 300.81965 * 15 14 13 17 17 H 1.09001 * 109.52559 * 177.55554 * 16 15 14 18 18 F 1.39895 * 109.57946 * 297.71883 * 16 15 14 19 19 C 1.53123 * 109.16116 * 57.65758 * 16 15 14 20 20 H 1.08991 * 109.53753 * 62.30157 * 19 16 15 21 21 O 1.42903 * 109.50450 * 182.40508 * 19 16 15 22 22 C 1.46847 * 110.99783 * 189.84379 * 13 3 2 23 23 H 1.09000 * 109.47788 * 300.00517 * 1 2 3 24 24 H 1.09006 * 109.47125 * 60.00533 * 1 2 3 25 25 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47788 * 239.99483 * 2 1 3 27 27 H 1.09006 * 109.47125 * 119.99467 * 2 1 3 28 28 H 0.97000 * 119.99723 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46098 * 305.86002 * 14 13 3 30 30 H 1.09007 * 109.45881 * 65.81855 * 14 13 3 31 31 H 1.09000 * 109.50120 * 180.87775 * 15 14 13 32 32 H 1.09003 * 109.53672 * 60.78327 * 15 14 13 33 33 H 0.96695 * 113.99848 * 299.80265 * 21 19 16 34 34 H 1.09000 * 109.46545 * 294.17786 * 22 13 3 35 35 H 1.09002 * 109.46481 * 54.15459 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6166 1.9775 -0.8503 5 6 3.5433 1.4438 -0.1036 6 1 4.1381 1.8922 0.6785 7 6 4.1596 0.8726 -1.1968 8 7 3.4353 0.3262 -2.1489 9 14 6.0232 0.8736 -1.3247 10 1 6.6009 1.5446 -0.1326 11 1 6.5155 -0.5257 -1.3928 12 1 6.4348 1.6033 -2.5508 13 7 1.6343 2.1053 1.2466 14 6 2.2937 1.4927 2.4070 15 6 1.7400 2.1085 3.6939 16 6 1.9900 3.6190 3.6799 17 1 1.5588 4.0679 4.5747 18 9 3.3667 3.8661 3.6499 19 6 1.3341 4.2255 2.4363 20 1 0.2564 4.0684 2.4794 21 8 1.6104 5.6267 2.3865 22 6 1.8996 3.5484 1.1858 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8689 -0.0759 -2.9178 29 1 2.1047 0.4192 2.4073 30 1 3.3675 1.6722 2.3511 31 1 2.2408 1.6647 4.5544 32 1 0.6688 1.9175 3.7579 33 1 1.2797 6.1201 3.1494 34 1 2.9751 3.7182 1.1357 35 1 1.4240 3.9680 0.2993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = -104.421167 kcal Electronic energy + Delta-G solvation = -17632.903258 eV Core-core repulsion = 14772.889653 eV Total energy + Delta-G solvation = -2860.013605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.31194 -38.40912 -36.33799 -33.75990 -31.69282 -30.68245 -29.05402 -26.50065 -23.95775 -22.59674 -22.25924 -19.70673 -18.94584 -17.22410 -16.29747 -16.24989 -15.35303 -14.91797 -14.58427 -14.25391 -13.99032 -13.21410 -12.90029 -12.67186 -12.51479 -12.14332 -11.92627 -11.49314 -11.30883 -11.16869 -10.88865 -10.79075 -10.57552 -10.42573 -10.17950 -9.91622 -9.67906 -9.44749 -9.40060 -9.07942 -8.36010 -7.19045 -5.98900 -4.11363 3.27857 3.36533 3.41973 4.21411 4.42184 4.69705 4.79835 4.92049 5.21124 5.27166 5.33756 5.56377 5.82956 5.90825 6.03048 6.21302 6.28358 6.43719 6.45249 6.55763 6.66431 6.74746 6.83262 7.08739 7.16128 7.32065 7.57764 7.74888 7.77725 7.93179 8.13418 8.26548 8.44156 8.97836 9.56454 11.00912 Molecular weight = 231.14amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.010023 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.656381 B = 2792.887048 C = 3329.095626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.040 0.960 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.056 3.944 15 C -0.143 4.143 16 C 0.062 3.938 17 H 0.073 0.927 18 F -0.206 7.206 19 C 0.083 3.917 20 H 0.074 0.926 21 O -0.559 6.559 22 C 0.070 3.930 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.372 0.628 34 H 0.050 0.950 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 3.964 9.971 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.256 5.256 14 C -0.073 4.073 15 C -0.181 4.181 16 C 0.025 3.975 17 H 0.091 0.909 18 F -0.187 7.187 19 C 0.023 3.977 20 H 0.092 0.908 21 O -0.363 6.363 22 C -0.058 4.058 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.112 0.888 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.218 0.782 34 H 0.068 0.932 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.741 3.646 9.267 11.495 hybrid contribution 1.757 0.225 0.353 1.806 sum -3.984 3.872 9.619 11.108 Atomic orbital electron populations 1.21714 0.98825 0.98445 1.00590 1.21606 0.92240 0.98963 1.02066 1.19281 0.93191 0.91119 0.85391 0.94218 1.21795 0.92711 1.37804 1.05947 0.92314 1.24895 0.97939 0.94974 0.95558 1.69881 1.34797 1.38166 1.09584 0.86619 0.86188 0.77665 0.78070 1.19833 1.21006 1.21001 1.62366 1.57404 1.00731 1.05120 1.21933 0.97597 0.99125 0.88619 1.22221 1.02823 0.93168 0.99891 1.22348 0.77663 0.98154 0.99315 0.90950 1.92813 1.32595 1.95532 1.97764 1.22493 0.98762 0.80650 0.95745 0.90844 1.86572 1.82885 1.19106 1.47743 1.21629 1.00098 0.89498 0.94606 0.93395 0.94194 0.95571 0.88831 0.94826 0.92948 0.90383 0.93455 0.91063 0.89988 0.78240 0.93199 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.79 37.15 0.36 -2.37 16 2 C -0.11 -2.55 5.14 -26.73 -0.14 -2.69 16 3 C 0.22 5.26 1.71 -68.86 -0.12 5.14 16 4 H 0.04 1.08 7.99 -51.93 -0.41 0.66 16 5 C -0.54 -14.62 7.23 -34.44 -0.25 -14.87 16 6 H 0.06 1.63 5.84 -52.49 -0.31 1.32 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.89 -24.84 11.30 55.43 0.63 -24.21 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.53 -10.96 4.02 -228.07 -0.92 -11.88 16 14 C 0.06 1.07 4.67 -3.84 -0.02 1.05 16 15 C -0.14 -2.12 5.88 -26.66 -0.16 -2.28 16 16 C 0.06 0.92 3.81 -26.61 -0.10 0.82 16 17 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 18 F -0.21 -3.80 16.16 2.25 0.04 -3.77 16 19 C 0.08 1.32 3.44 -26.65 -0.09 1.23 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 21 O -0.56 -8.51 13.24 -35.23 -0.47 -8.98 16 22 C 0.07 1.42 4.73 -3.83 -0.02 1.40 16 23 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 27 H 0.03 0.76 6.25 -51.93 -0.32 0.43 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 1.51 6.13 -51.93 -0.32 1.19 16 30 H 0.05 1.05 6.12 -51.93 -0.32 0.73 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.37 3.63 9.08 45.56 0.41 4.04 16 34 H 0.05 1.16 7.02 -51.93 -0.36 0.80 16 35 H 0.07 1.54 8.02 -51.93 -0.42 1.13 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -29.33 274.57 -6.66 -35.98 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.43 Total: 3.03 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.62 Total: -10.77 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.29 Total: -36.09 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.47 Total: -8.98 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.33 -6.66 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.438 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds