Wall clock time and date at job start Sun Mar 29 2020 22:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34859 * 119.99678 * 2 1 4 4 C 1.47292 * 119.99777 * 186.90238 * 3 2 1 5 5 C 1.39727 * 119.76094 * 229.75567 * 4 3 2 6 6 C 1.38405 * 119.02893 * 179.73516 * 5 4 3 7 7 C 1.38762 * 118.53320 * 0.53079 * 6 5 4 8 8 C 1.38496 * 119.42507 * 359.73069 * 7 6 5 9 9 N 1.31575 * 120.93630 * 359.97438 * 8 7 6 10 10 C 1.46418 * 120.00476 * 180.02562 * 2 1 3 11 11 O 1.21732 * 120.00651 * 186.42039 * 10 2 1 12 12 N 1.34776 * 119.99566 * 6.42260 * 10 2 1 13 13 C 1.36635 * 120.00158 * 180.02562 * 12 10 2 14 14 H 1.08005 * 119.99581 * 0.02562 * 13 12 10 15 15 C 1.39185 * 120.00508 * 179.97438 * 13 12 10 16 16 N 1.31287 * 119.99739 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00408 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47030 * 59.99683 * 17 15 13 19 19 H 1.48499 * 109.47333 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46662 * 299.99967 * 17 15 13 21 21 H 1.08998 * 109.46730 * 89.99581 * 1 2 3 22 22 H 1.08995 * 109.46957 * 209.99772 * 1 2 3 23 23 H 1.09005 * 109.46797 * 329.99721 * 1 2 3 24 24 H 1.07993 * 120.00357 * 7.18623 * 3 2 1 25 25 H 1.07995 * 120.48819 * 359.97438 * 5 4 3 26 26 H 1.08002 * 120.73233 * 180.23978 * 6 5 4 27 27 H 1.07992 * 120.29114 * 179.70779 * 7 6 5 28 28 H 1.07999 * 119.52923 * 179.97438 * 8 7 6 29 29 H 0.97000 * 120.00563 * 359.97438 * 12 10 2 30 30 H 0.97000 * 119.99946 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1812 1.1680 0.0000 4 6 3.6462 1.1726 -0.1533 5 6 4.4348 1.9014 0.7407 6 6 5.8101 1.8907 0.5860 7 6 6.3535 1.1622 -0.4626 8 6 5.5126 0.4667 -1.3155 9 7 4.2082 0.4872 -1.1447 10 6 2.2392 -1.2680 -0.0006 11 8 3.4508 -1.2714 0.1173 12 7 1.5717 -2.4314 -0.1317 13 6 2.2548 -3.6148 -0.1317 14 1 3.3297 -3.6177 -0.0262 15 6 1.5654 -4.8164 -0.2665 16 7 0.2587 -4.8128 -0.3932 17 14 2.4993 -6.4342 -0.2658 18 1 3.2313 -6.5826 1.0177 19 1 1.5420 -7.5585 -0.4232 20 1 3.4671 -6.4475 -1.3921 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6477 2.0995 0.1170 25 1 3.9781 2.4617 1.5432 26 1 6.4461 2.4411 1.2635 27 1 7.4226 1.1380 -0.6127 28 1 5.9337 -0.1005 -2.1325 29 1 0.6062 -2.4289 -0.2253 30 1 -0.2217 -5.6502 -0.4875 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464715953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:53 Heat of formation + Delta-G solvation = 1.230805 kcal Electronic energy + Delta-G solvation = -15610.637597 eV Core-core repulsion = 12984.715624 eV Total energy + Delta-G solvation = -2625.921972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98289 -39.86179 -36.18751 -35.34034 -33.47142 -33.02366 -31.91348 -27.90602 -27.21919 -24.47533 -23.93210 -22.75745 -20.25227 -19.44454 -18.08739 -17.09624 -16.89505 -16.61119 -15.98677 -15.68257 -15.39347 -14.92958 -14.59577 -14.03391 -13.85994 -13.72131 -13.48932 -13.18647 -13.05345 -12.94951 -12.45369 -12.26911 -12.13914 -11.53837 -10.81907 -10.46415 -10.18749 -10.01775 -9.94462 -9.18976 -8.51594 -5.93365 -0.05093 0.58830 0.94996 1.37228 1.41904 1.48948 2.27325 2.52048 3.13875 3.29403 3.36313 3.62680 3.95061 4.13205 4.28980 4.32102 4.41384 4.44677 4.66831 4.85046 4.91004 4.95207 5.10339 5.24828 5.33797 5.38056 5.46226 5.64761 5.99097 6.05992 6.60448 7.11702 7.37640 7.56472 8.17193 8.66126 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.007579 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.273994 B = 3693.300924 C = 4441.528123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C -0.077 4.077 4 C 0.146 3.854 5 C -0.173 4.173 6 C -0.085 4.085 7 C -0.182 4.182 8 C 0.074 3.926 9 N -0.475 5.475 10 C 0.460 3.540 11 O -0.611 6.611 12 N -0.562 5.562 13 C -0.330 4.330 14 H 0.075 0.925 15 C -0.013 4.013 16 N -0.915 5.915 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.265 1.265 20 H -0.273 1.273 21 H 0.081 0.919 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.181 0.819 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.158 0.842 28 H 0.148 0.852 29 H 0.396 0.604 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 12.757 1.635 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.098 4.098 4 C 0.011 3.989 5 C -0.193 4.193 6 C -0.110 4.110 7 C -0.201 4.201 8 C -0.085 4.085 9 N -0.185 5.185 10 C 0.250 3.750 11 O -0.498 6.498 12 N -0.198 5.198 13 C -0.460 4.460 14 H 0.093 0.907 15 C -0.213 4.213 16 N -0.555 5.555 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.190 1.190 20 H -0.199 1.199 21 H 0.100 0.900 22 H 0.073 0.927 23 H 0.125 0.875 24 H 0.199 0.801 25 H 0.175 0.825 26 H 0.184 0.816 27 H 0.176 0.824 28 H 0.166 0.834 29 H 0.231 0.769 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.607 12.087 1.116 12.663 hybrid contribution 0.445 -0.848 0.353 1.021 sum 4.053 11.239 1.469 12.037 Atomic orbital electron populations 1.20850 0.88475 1.03977 1.03383 1.22195 0.97603 0.92326 1.01848 1.22254 0.90549 0.98025 0.98926 1.20232 0.94962 0.91594 0.92077 1.22376 0.95097 1.01454 1.00332 1.21829 0.94915 0.97281 0.97022 1.22416 1.02017 0.99158 0.96552 1.22884 0.89213 0.97064 0.99331 1.67732 1.14368 1.13884 1.22484 1.18632 0.87738 0.85029 0.83613 1.90611 1.15210 1.87398 1.56585 1.41873 1.09911 1.05003 1.63047 1.19602 0.93178 0.84421 1.48835 0.90654 1.26107 0.96588 1.02458 0.96168 1.69607 1.07415 1.29776 1.48751 0.84982 0.77846 0.76554 0.78892 1.19674 1.18956 1.19863 0.90001 0.92726 0.87525 0.80148 0.82530 0.81593 0.82448 0.83428 0.76926 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 9.48 71.24 0.68 -2.61 16 2 C -0.14 -5.30 6.01 -18.51 -0.11 -5.41 16 3 C -0.08 -2.59 9.51 23.88 0.23 -2.36 16 4 C 0.15 5.58 4.93 41.71 0.21 5.78 16 5 C -0.17 -5.20 9.84 22.67 0.22 -4.98 16 6 C -0.08 -2.25 10.16 22.44 0.23 -2.02 16 7 C -0.18 -5.25 10.11 22.46 0.23 -5.02 16 8 C 0.07 2.75 11.17 84.79 0.95 3.70 16 9 N -0.48 -20.73 7.68 -185.25 -1.42 -22.15 16 10 C 0.46 24.04 7.41 86.37 0.64 24.68 16 11 O -0.61 -35.64 12.27 -4.45 -0.05 -35.70 16 12 N -0.56 -31.04 5.19 -310.90 -1.62 -32.65 16 13 C -0.33 -19.74 9.68 84.17 0.81 -18.93 16 14 H 0.08 4.81 7.15 -2.91 -0.02 4.79 16 15 C -0.01 -0.71 5.50 85.00 0.47 -0.24 16 16 N -0.92 -50.75 13.04 21.70 0.28 -50.47 16 17 Si 0.99 44.27 29.55 68.60 2.03 46.29 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.05 1.79 6.96 -2.39 -0.02 1.77 16 23 H 0.11 2.25 8.07 -2.38 -0.02 2.23 16 24 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 25 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 26 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 27 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.15 4.99 8.06 -2.91 -0.02 4.96 16 29 H 0.40 20.72 6.14 -92.71 -0.57 20.15 16 30 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -75.70 267.91 4.35 -71.35 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.59 Total: 30.72 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.54 Total: -7.40 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -2.75 Total: -105.27 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.05 Total: -35.70 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -75.70 4.35 -71.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464715953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.582 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds