Wall clock time and date at job start Sun Mar 29 2020 22:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33036 * 120.00235 * 2 1 4 4 C 1.47042 * 119.99736 * 359.97438 * 3 2 1 5 5 O 1.21615 * 120.00470 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.39154 * 120.00031 * 184.95800 * 6 4 3 8 8 C 1.39705 * 119.57668 * 174.67947 * 7 6 4 9 9 C 1.38646 * 119.49583 * 179.97438 * 8 7 6 10 10 C 1.38358 * 118.67022 * 359.97438 * 9 8 7 11 11 C 1.40576 * 119.13316 * 0.02562 * 10 9 8 12 12 C 1.41340 * 119.78681 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99634 * 5.24211 * 12 11 10 14 14 C 1.40023 * 120.00277 * 185.24226 * 12 11 10 15 15 N 1.30737 * 119.99970 * 354.77684 * 14 12 11 16 16 Si 1.86806 * 120.00087 * 174.77703 * 14 12 11 17 17 H 1.48502 * 109.46954 * 94.99642 * 16 14 12 18 18 H 1.48495 * 109.46984 * 214.99795 * 16 14 12 19 19 H 1.48500 * 109.46776 * 335.00149 * 16 14 12 20 20 N 1.31921 * 119.57788 * 354.40199 * 7 6 4 21 21 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47275 * 300.00722 * 1 2 3 23 23 H 1.09001 * 109.46587 * 60.00176 * 1 2 3 24 24 H 1.08007 * 120.00042 * 179.97438 * 2 1 3 25 25 H 1.07995 * 119.99829 * 179.97438 * 3 2 1 26 26 H 0.97001 * 119.99865 * 5.23211 * 6 4 3 27 27 H 1.07996 * 120.25472 * 359.95627 * 8 7 6 28 28 H 1.07995 * 120.66498 * 180.02562 * 9 8 7 29 29 H 1.08001 * 120.43233 * 179.97438 * 10 9 8 30 30 H 0.97003 * 120.00568 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1521 0.0000 4 6 1.4370 2.4255 -0.0006 5 8 0.2208 2.4256 -0.0006 6 7 2.1109 3.5927 0.0000 7 6 1.4189 4.7956 0.1036 8 6 2.1302 5.9928 0.2157 9 6 1.4391 7.1903 0.3183 10 6 0.0558 7.1617 0.3058 11 6 -0.6020 5.9247 0.1904 12 6 -2.0146 5.8794 0.1757 13 1 -2.5842 6.7970 0.1673 14 6 -2.6756 4.6450 0.1718 15 7 -1.9891 3.5362 0.0787 16 14 -4.5382 4.5823 0.2996 17 1 -5.1253 4.5004 -1.0620 18 1 -4.9406 3.3880 1.0848 19 1 -5.0293 5.8090 0.9773 20 7 0.0998 4.7913 0.0891 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 2.0470 -0.9354 0.0004 25 1 3.2522 1.1520 0.0004 26 1 3.0779 3.5945 -0.0759 27 1 3.2101 5.9855 0.2227 28 1 1.9698 8.1268 0.4054 29 1 -0.5111 8.0776 0.3844 30 1 -2.4469 2.6810 0.0757 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636655965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:15 Heat of formation + Delta-G solvation = 40.087773 kcal Electronic energy + Delta-G solvation = -15977.349945 eV Core-core repulsion = 13353.112938 eV Total energy + Delta-G solvation = -2624.237008 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.25700 -37.56210 -34.40535 -33.36805 -32.88406 -30.27373 -29.23662 -27.10689 -25.45795 -22.75117 -21.39822 -20.32399 -18.66406 -17.43377 -16.34795 -15.76537 -14.74257 -14.43236 -14.18432 -14.09938 -13.45772 -13.10627 -12.66584 -12.61193 -11.89889 -11.79429 -11.63117 -11.26962 -11.14170 -10.92182 -10.62562 -10.44774 -9.91719 -9.58886 -8.99756 -8.94140 -8.69636 -7.92643 -7.14563 -6.89519 -6.11694 -4.36668 1.90725 2.88473 3.16623 3.18507 3.21090 3.29877 4.02753 4.08344 4.25703 4.96966 5.21348 5.32966 5.72958 5.95901 6.06830 6.14577 6.32362 6.43359 6.52837 6.68094 6.78621 6.88081 6.90865 6.99099 7.28336 7.60591 7.68524 7.84736 8.13147 8.25196 8.53601 8.78596 9.08555 9.36736 10.28529 10.50869 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.012375 C = 0.007479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.632056 B = 2262.110049 C = 3742.985872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.083 4.083 3 C -0.218 4.218 4 C 0.494 3.506 5 O -0.404 6.404 6 N -0.665 5.665 7 C 0.373 3.627 8 C -0.358 4.358 9 C -0.037 4.037 10 C -0.307 4.307 11 C 0.271 3.729 12 C -0.427 4.427 13 H 0.082 0.918 14 C 0.059 3.941 15 N -0.655 5.655 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.263 1.263 20 N -0.473 5.473 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.398 0.602 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -5.754 -0.101 7.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.102 4.102 3 C -0.239 4.239 4 C 0.279 3.721 5 O -0.271 6.271 6 N -0.311 5.311 7 C 0.134 3.866 8 C -0.384 4.384 9 C -0.061 4.061 10 C -0.330 4.330 11 C 0.146 3.854 12 C -0.457 4.457 13 H 0.100 0.900 14 C -0.170 4.170 15 N -0.274 5.274 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.187 1.187 20 N -0.192 5.192 21 H 0.060 0.940 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.231 0.769 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.111 -6.863 -0.173 8.002 hybrid contribution 0.520 0.793 0.120 0.956 sum 4.631 -6.070 -0.054 7.635 Atomic orbital electron populations 1.21029 0.91670 1.00044 1.04990 1.23608 0.97508 0.96613 0.92483 1.22802 0.99667 0.93622 1.07848 1.18865 0.88948 0.83709 0.80566 1.91217 1.10784 1.85621 1.39448 1.43359 1.09448 1.04802 1.73536 1.18643 0.90991 0.83477 0.93520 1.20520 0.97505 0.92639 1.27708 1.20559 0.94108 0.95600 0.95830 1.21624 0.93869 0.98414 1.19062 1.18407 0.93495 0.85727 0.87814 1.19564 0.90070 0.93333 1.42765 0.90023 1.26163 0.99613 0.96017 0.95227 1.70343 1.35275 0.97672 1.24102 0.86527 0.83906 0.78808 0.78875 1.19775 1.20290 1.18737 1.68738 1.01845 1.28293 1.20312 0.94042 0.89730 0.89720 0.86747 0.86736 0.76871 0.89144 0.88689 0.88621 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 8.45 36.00 0.30 -1.62 16 2 C -0.08 -1.15 10.35 -36.12 -0.37 -1.53 16 3 C -0.22 -3.33 10.03 -37.82 -0.38 -3.71 16 4 C 0.49 10.22 7.69 -12.69 -0.10 10.12 16 5 O -0.40 -9.94 8.83 5.26 0.05 -9.90 16 6 N -0.66 -13.58 5.37 -12.49 -0.07 -13.65 16 7 C 0.37 9.31 7.42 -155.06 -1.15 8.16 16 8 C -0.36 -8.25 9.96 -38.88 -0.39 -8.64 16 9 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 10 C -0.31 -7.87 9.83 -38.66 -0.38 -8.25 16 11 C 0.27 7.72 6.55 -85.00 -0.56 7.17 16 12 C -0.43 -11.86 9.13 -37.73 -0.34 -12.20 16 13 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 14 C 0.06 1.55 5.49 -17.35 -0.10 1.46 16 15 N -0.66 -18.00 9.01 55.55 0.50 -17.50 16 16 Si 0.89 19.31 29.56 -169.99 -5.03 14.28 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 20 N -0.47 -13.45 5.75 -10.27 -0.06 -13.51 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 23 H 0.08 1.55 7.22 -51.93 -0.37 1.17 16 24 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 25 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.40 6.33 8.68 -40.82 -0.35 5.97 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 30 H 0.27 6.92 8.29 -40.82 -0.34 6.58 16 LS Contribution 262.59 15.07 3.96 3.96 Total: -1.00 -31.89 262.59 -7.70 -39.59 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.19 Total: 7.02 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.86 Total: -10.29 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.37 Total: -44.65 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.05 Total: -9.90 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.89 -7.70 -39.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636655965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.674 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds