Wall clock time and date at job start Sun Mar 29 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48499 * 109.47394 * 270.00678 * 3 2 1 5 5 H 1.48510 * 109.46666 * 30.00615 * 3 2 1 6 6 H 1.48501 * 109.47353 * 150.00355 * 3 2 1 7 7 C 1.38815 * 120.00725 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00447 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99289 * 359.97438 * 7 2 1 10 10 C 1.46612 * 126.54926 * 359.97438 * 9 7 2 11 11 C 1.50828 * 107.72505 * 179.79085 * 10 9 7 12 12 C 1.38624 * 131.01887 * 179.56065 * 11 10 9 13 13 C 1.37831 * 120.30387 * 180.36905 * 12 11 10 14 14 C 1.39646 * 119.80935 * 0.25611 * 13 12 11 15 15 C 1.47729 * 120.17855 * 179.97438 * 14 13 12 16 16 O 1.21470 * 119.99974 * 180.02562 * 15 14 13 17 17 O 1.34714 * 119.99733 * 0.02562 * 15 14 13 18 18 C 1.39526 * 119.64431 * 359.97438 * 14 13 12 19 19 C 1.38168 * 119.98154 * 0.02562 * 18 14 13 20 20 C 1.46621 * 126.53744 * 180.02562 * 9 7 2 21 21 H 0.96997 * 120.00466 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.80950 * 299.56028 * 10 9 7 23 23 H 1.08997 * 109.80622 * 60.38249 * 10 9 7 24 24 H 1.08002 * 119.84976 * 0.65196 * 12 11 10 25 25 H 1.08000 * 120.09715 * 180.27510 * 13 12 11 26 26 H 0.96701 * 116.99752 * 180.02562 * 17 15 14 27 27 H 1.07994 * 120.00593 * 179.97438 * 18 14 13 28 28 H 1.08995 * 109.81109 * 60.45083 * 20 9 7 29 29 H 1.08997 * 109.81004 * 299.54284 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1309 -2.5553 0.0005 11 6 -0.4232 -4.0349 -0.0052 12 6 -1.6256 -4.7248 0.0015 13 6 -1.6366 -6.1031 0.0016 14 6 -0.4306 -6.8069 0.0004 15 6 -0.4329 -8.2842 0.0010 16 8 0.6181 -8.8932 0.0005 17 8 -1.6006 -8.9559 0.0023 18 6 0.7767 -6.1075 -0.0015 19 6 0.7742 -4.7258 -0.0016 20 6 1.9094 -3.7330 -0.0005 21 1 -0.4851 0.8400 0.0004 22 1 -0.5549 -2.0952 0.8931 23 1 -0.5563 -2.0935 -0.8905 24 1 -2.5580 -4.1798 0.0020 25 1 -2.5753 -6.6371 0.0023 26 1 -1.5515 -9.9217 0.0031 27 1 1.7128 -6.6459 -0.0020 28 1 2.5204 -3.8705 0.8915 29 1 2.5203 -3.8705 -0.8927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169156642.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:20 Heat of formation + Delta-G solvation = -54.766119 kcal Electronic energy + Delta-G solvation = -15486.855091 eV Core-core repulsion = 12760.786248 eV Total energy + Delta-G solvation = -2726.068843 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.58437 -40.52911 -37.43154 -37.04899 -34.24093 -32.57535 -31.43864 -28.64688 -27.61516 -24.95980 -23.33546 -22.20260 -21.65303 -19.18910 -18.73081 -18.09112 -17.20040 -16.66549 -16.07958 -16.06679 -15.98676 -15.31783 -14.74197 -14.63735 -13.88176 -13.57132 -13.50281 -13.35951 -13.05977 -12.73211 -12.54370 -12.29253 -12.08756 -11.89761 -11.86000 -11.63653 -10.96037 -9.90872 -9.80766 -8.89487 -7.94085 -5.30788 -0.34540 0.32558 1.47698 1.49751 1.50382 1.58707 2.02188 2.45250 2.71906 3.29121 3.46426 3.55211 3.79210 3.95107 4.12133 4.30201 4.55621 4.67733 4.80437 4.81959 4.99336 5.18922 5.25310 5.26440 5.30493 5.50049 5.57488 5.73334 5.81933 6.08051 6.99456 6.99914 7.63696 8.30786 9.19253 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.068011 B = 0.005524 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.597694 B = 5067.473870 C = 5458.577415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.061 4.061 3 Si 0.988 3.012 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.624 5.624 10 C 0.215 3.785 11 C -0.075 4.075 12 C -0.119 4.119 13 C -0.043 4.043 14 C -0.149 4.149 15 C 0.544 3.456 16 O -0.549 6.549 17 O -0.498 6.498 18 C -0.037 4.037 19 C -0.128 4.128 20 C 0.173 3.827 21 H 0.252 0.748 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.150 0.850 25 H 0.174 0.826 26 H 0.435 0.565 27 H 0.140 0.860 28 H 0.045 0.955 29 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 -14.300 0.041 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.815 3.185 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.351 5.351 10 C 0.090 3.910 11 C -0.076 4.076 12 C -0.137 4.137 13 C -0.060 4.060 14 C -0.150 4.150 15 C 0.390 3.610 16 O -0.441 6.441 17 O -0.312 6.312 18 C -0.055 4.055 19 C -0.129 4.129 20 C 0.048 3.952 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.168 0.832 25 H 0.191 0.809 26 H 0.297 0.703 27 H 0.158 0.842 28 H 0.063 0.937 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.570 -13.823 0.048 14.558 hybrid contribution 0.531 0.576 -0.020 0.784 sum -4.038 -13.246 0.028 13.848 Atomic orbital electron populations 1.70109 1.06362 1.25948 1.57437 1.25729 0.96771 1.01217 1.01744 0.84952 0.77613 0.78363 0.77594 1.21060 1.21796 1.19227 1.19399 0.91188 0.82517 1.44320 0.89170 1.44237 1.02041 1.01060 1.87745 1.19425 0.85054 0.87214 0.99264 1.21562 0.94819 0.97040 0.94186 1.20782 0.97019 0.94183 1.01685 1.21573 0.98159 0.92882 0.93415 1.18918 0.94745 0.89521 1.11806 1.20572 0.81126 0.88274 0.70989 1.90870 1.34321 1.70618 1.48314 1.84502 1.33045 1.28638 1.85029 1.20507 0.98348 0.91299 0.95359 1.20456 0.96141 0.93643 1.02624 1.19791 0.93087 0.83012 0.99331 0.93867 0.94625 0.94700 0.83189 0.80889 0.70305 0.84201 0.93731 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.96 10.44 21.65 0.23 -55.73 15 2 C -0.06 -3.43 5.49 84.86 0.47 -2.97 15 3 Si 0.99 44.92 29.55 68.60 2.03 46.95 15 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 15 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 15 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.25 -13.81 10.32 84.03 0.87 -12.94 15 8 H 0.09 4.78 7.83 -2.91 -0.02 4.76 15 9 N -0.62 -32.96 3.40 -709.66 -2.42 -35.38 15 10 C 0.22 10.78 5.39 85.65 0.46 11.24 15 11 C -0.08 -2.96 6.22 -19.73 -0.12 -3.08 15 12 C -0.12 -3.57 10.03 22.27 0.22 -3.34 15 13 C -0.04 -1.05 9.62 22.51 0.22 -0.83 15 14 C -0.15 -4.10 5.87 -20.12 -0.12 -4.22 15 15 C 0.54 13.27 8.27 70.33 0.58 13.85 15 16 O -0.55 -16.50 17.13 19.93 0.34 -16.16 15 17 O -0.50 -7.79 12.69 -56.24 -0.71 -8.50 15 18 C -0.04 -1.17 9.60 22.56 0.22 -0.95 15 19 C -0.13 -4.87 6.21 -19.84 -0.12 -4.99 15 20 C 0.17 7.47 7.25 85.65 0.62 8.09 15 21 H 0.25 14.32 8.31 -92.71 -0.77 13.55 15 22 H 0.04 1.97 7.49 -2.39 -0.02 1.96 15 23 H 0.04 1.93 7.48 -2.39 -0.02 1.92 15 24 H 0.15 3.85 8.06 -2.91 -0.02 3.82 15 25 H 0.17 2.99 7.62 -2.91 -0.02 2.97 15 26 H 0.43 2.55 9.11 -74.06 -0.67 1.88 15 27 H 0.14 4.18 7.65 -2.91 -0.02 4.16 15 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 29 H 0.04 1.86 8.14 -2.39 -0.02 1.85 15 Total: -1.00 -68.89 258.63 3.27 -65.63 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 0.51 Total: 3.34 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 3.29 Total: -0.15 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -2.19 Total: -91.11 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.37 Total: -24.66 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.89 3.27 -65.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169156642.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.863 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds