Wall clock time and date at job start Sun Mar 29 2020 21:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.38417 * 119.99717 * 85.00386 * 13 3 2 15 15 N 1.32731 * 120.17048 * 0.02562 * 14 13 3 16 16 C 1.32113 * 119.99462 * 179.97438 * 15 14 13 17 17 C 1.38647 * 120.35604 * 0.02562 * 16 15 14 18 18 N 1.31838 * 120.34809 * 359.97438 * 17 16 15 19 19 C 1.33026 * 119.99390 * 359.73164 * 18 17 16 20 20 C 1.43196 * 120.17934 * 180.27075 * 19 18 17 21 21 N 5.67850 * 91.33747 * 306.77751 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 29 29 H 1.08003 * 119.82200 * 180.02562 * 16 15 14 30 30 H 1.08003 * 119.82499 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4023 2.6796 -1.3702 15 7 -0.4478 2.6470 -0.3514 16 6 -1.6400 3.2043 -0.4679 17 6 -2.0109 3.8246 -1.6511 18 7 -1.1773 3.8650 -2.6718 19 6 0.0287 3.3135 -2.5676 20 6 0.9394 3.3601 -3.6717 21 7 1.6625 3.3988 -4.5471 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 2.2720 2.1231 -1.9978 29 1 -2.3294 3.1765 0.3630 30 1 -2.9878 4.2770 -1.7372 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273851657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:12 Heat of formation + Delta-G solvation = 81.925832 kcal Electronic energy + Delta-G solvation = -15757.463758 eV Core-core repulsion = 13167.333735 eV Total energy + Delta-G solvation = -2590.130022 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83944 -36.80214 -36.35627 -33.80230 -33.06520 -31.43539 -29.74003 -26.89268 -25.37115 -23.60867 -22.59995 -20.08568 -19.20856 -18.16915 -16.98792 -16.19493 -15.23788 -15.00808 -14.85438 -13.91619 -13.77397 -13.34360 -12.87237 -12.77661 -12.63385 -12.45041 -11.87160 -11.46034 -11.28730 -11.13101 -11.01574 -10.84525 -10.56183 -10.32628 -9.79533 -9.63707 -9.14549 -8.84965 -8.56539 -7.33860 -6.25763 -4.35592 0.79630 1.59650 2.74578 3.13558 3.18163 3.25431 3.27730 3.52911 3.90631 4.17988 4.25118 4.58186 4.84418 5.06568 5.18359 5.38715 5.50067 6.21532 6.25786 6.32877 6.49328 6.83482 6.91309 7.15801 7.22123 7.38304 7.50912 7.55041 7.69969 7.79109 8.00217 8.07327 8.38784 8.71044 9.31437 10.79330 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.007947 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.881352 B = 3522.430544 C = 4103.590183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.062 0.938 5 C -0.541 4.541 6 H 0.061 0.939 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.417 3.583 15 N -0.480 5.480 16 C 0.142 3.858 17 C -0.042 4.042 18 N -0.367 5.367 19 C 0.025 3.975 20 C 0.282 3.718 21 N -0.414 5.414 22 H 0.026 0.974 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.171 0.829 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 3.062 -2.152 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.079 0.921 5 C -0.580 4.580 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.286 5.286 14 C 0.171 3.829 15 N -0.203 5.203 16 C -0.027 4.027 17 C -0.209 4.209 18 N -0.082 5.082 19 C -0.124 4.124 20 C -0.034 4.034 21 N -0.093 5.093 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.239 0.761 29 H 0.189 0.811 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.819 2.841 -3.119 8.884 hybrid contribution 0.806 -0.035 0.197 0.831 sum -7.012 2.806 -2.921 8.098 Atomic orbital electron populations 1.21850 0.98356 0.98326 1.00752 1.21963 0.92701 0.99435 1.02686 1.19078 0.94670 0.89445 0.79984 0.92066 1.21195 0.90442 1.39683 1.06640 0.92059 1.24833 0.98795 0.94449 0.95209 1.69865 1.35278 1.37255 1.09279 0.86434 0.84545 0.77777 0.78349 1.20425 1.20903 1.19800 1.45823 1.10069 1.53439 1.19239 1.19205 0.88205 0.87330 0.88202 1.68554 1.03416 1.20499 1.27797 1.23858 0.92373 0.88739 0.97708 1.23154 1.00849 1.06222 0.90715 1.67912 0.99993 1.10131 1.30160 1.16404 0.93380 1.11975 0.90633 1.24767 0.92866 0.93441 0.92296 1.81213 1.09678 1.09122 1.09258 0.95532 0.95114 0.92378 0.87771 0.94961 0.92377 0.76106 0.81147 0.81464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.45 37.16 0.31 -2.29 16 2 C -0.13 -2.88 5.45 -26.73 -0.15 -3.02 16 3 C 0.27 6.22 2.25 -69.08 -0.16 6.06 16 4 H 0.06 1.56 7.55 -51.93 -0.39 1.17 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -23.18 11.29 55.43 0.63 -22.56 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.67 -13.28 5.07 -54.75 -0.28 -13.55 16 14 C 0.42 7.47 6.03 -154.77 -0.93 6.54 16 15 N -0.48 -8.04 6.59 -11.97 -0.08 -8.11 16 16 C 0.14 1.74 11.22 -17.28 -0.19 1.55 16 17 C -0.04 -0.49 11.21 -17.40 -0.20 -0.69 16 18 N -0.37 -5.56 10.42 -10.74 -0.11 -5.67 16 19 C 0.02 0.42 6.61 -84.56 -0.56 -0.14 16 20 C 0.28 4.95 14.32 -22.47 -0.32 4.63 16 21 N -0.41 -7.62 18.54 41.84 0.78 -6.85 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.03 0.57 5.59 -51.93 -0.29 0.28 16 24 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 25 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.40 7.82 7.38 -40.82 -0.30 7.52 16 29 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 264.91 15.07 3.99 3.99 Total: -1.00 -27.45 264.91 -5.60 -33.06 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -2.92 Total: 4.26 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.58 Total: 0.33 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.93 Total: -56.75 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.45 -5.60 -33.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273851657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.984 kcal (2) G-P(sol) polarization free energy of solvation -27.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds