Wall clock time and date at job start Sun Mar 29 2020 21:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.38417 * 119.99717 * 85.00386 * 13 3 2 15 15 N 1.32731 * 120.17048 * 0.02562 * 14 13 3 16 16 C 1.32113 * 119.99462 * 179.97438 * 15 14 13 17 17 C 1.38647 * 120.35604 * 0.02562 * 16 15 14 18 18 N 1.31838 * 120.34809 * 359.97438 * 17 16 15 19 19 C 1.33026 * 119.99390 * 359.73164 * 18 17 16 20 20 C 1.43196 * 120.17934 * 180.27075 * 19 18 17 21 21 N 5.67850 * 91.33747 * 306.77751 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 29 29 H 1.08003 * 119.82200 * 180.02562 * 16 15 14 30 30 H 1.08003 * 119.82499 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4023 2.6796 -1.3702 15 7 -0.4478 2.6470 -0.3514 16 6 -1.6400 3.2043 -0.4679 17 6 -2.0109 3.8246 -1.6511 18 7 -1.1773 3.8650 -2.6718 19 6 0.0287 3.3135 -2.5676 20 6 0.9394 3.3601 -3.6717 21 7 1.6625 3.3988 -4.5471 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 2.2720 2.1231 -1.9978 29 1 -2.3294 3.1765 0.3630 30 1 -2.9878 4.2770 -1.7372 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273851657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:12 Heat of formation + Delta-G solvation = 64.551809 kcal Electronic energy + Delta-G solvation = -15758.217152 eV Core-core repulsion = 13167.333735 eV Total energy + Delta-G solvation = -2590.883416 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.05571 -38.31840 -37.73456 -35.26229 -34.53409 -33.13209 -31.11553 -28.61109 -26.56402 -25.22854 -24.05193 -21.72812 -20.48522 -19.62903 -18.33378 -17.88378 -16.80252 -16.51022 -16.00965 -15.54793 -14.99780 -14.83232 -14.56298 -14.11348 -14.03447 -13.72711 -13.55045 -13.18919 -12.89905 -12.76671 -12.56423 -12.28676 -12.14987 -12.04847 -11.52516 -11.16376 -10.87859 -10.50471 -9.99558 -8.73211 -8.19970 -6.35511 -0.38722 0.44026 1.40234 1.41010 1.42422 1.51118 1.84795 2.15741 2.40979 2.62403 2.99231 3.09876 3.43317 3.67202 4.03847 4.29991 4.57230 4.59118 4.62246 4.79771 5.09709 5.28268 5.37549 5.45985 5.57104 5.67109 5.82716 5.96047 6.17321 6.22052 6.40991 6.65928 6.73806 7.08862 7.34906 8.84170 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.007947 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.881352 B = 3522.430544 C = 4103.590183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.123 4.123 3 C 0.285 3.715 4 H 0.034 0.966 5 C -0.559 4.559 6 H 0.055 0.945 7 C 0.029 3.971 8 N -0.902 5.902 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.405 3.595 15 N -0.507 5.507 16 C 0.153 3.847 17 C -0.010 4.010 18 N -0.384 5.384 19 C 0.009 3.991 20 C 0.292 3.708 21 N -0.442 5.442 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.023 0.977 27 H 0.267 0.733 28 H 0.401 0.599 29 H 0.220 0.780 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 3.772 -1.903 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.163 4.163 3 C 0.182 3.818 4 H 0.052 0.948 5 C -0.598 4.598 6 H 0.073 0.927 7 C -0.173 4.173 8 N -0.539 5.539 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.198 1.198 13 N -0.305 5.305 14 C 0.162 3.838 15 N -0.230 5.230 16 C -0.016 4.016 17 C -0.179 4.179 18 N -0.099 5.099 19 C -0.136 4.136 20 C -0.024 4.024 21 N -0.121 5.121 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.236 0.764 29 H 0.236 0.764 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.877 3.566 -2.908 10.896 hybrid contribution 1.189 -0.152 0.175 1.211 sum -8.688 3.415 -2.734 9.727 Atomic orbital electron populations 1.21670 0.95814 0.99262 1.00904 1.21809 0.94954 0.98714 1.00789 1.18593 0.93123 0.89542 0.80566 0.94840 1.21532 0.92111 1.39536 1.06586 0.92697 1.25522 1.02465 0.94260 0.95047 1.69969 1.36603 1.37775 1.09601 0.85557 0.80155 0.77788 0.78126 1.20184 1.20393 1.19805 1.45440 1.11460 1.55466 1.18132 1.19220 0.87750 0.87779 0.89061 1.68575 1.04962 1.21650 1.27813 1.24755 0.91136 0.86371 0.99325 1.24106 1.01580 1.03094 0.89126 1.68020 0.99646 1.10619 1.31620 1.16248 0.94187 1.13219 0.89966 1.25006 0.92558 0.92671 0.92136 1.81198 1.10384 1.10272 1.10257 0.94141 0.94480 0.92507 0.90499 0.95819 0.92332 0.76376 0.76382 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.45 71.98 0.61 -3.88 16 2 C -0.12 -5.62 5.45 30.60 0.17 -5.45 16 3 C 0.28 13.46 2.25 44.25 0.10 13.56 16 4 H 0.03 1.76 7.55 -2.39 -0.02 1.74 16 5 C -0.56 -29.17 8.73 25.60 0.22 -28.95 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.03 1.49 5.29 84.66 0.45 1.94 16 8 N -0.90 -48.41 11.29 21.45 0.24 -48.16 16 9 Si 0.96 41.77 29.54 68.60 2.03 43.79 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 N -0.68 -27.83 5.07 -327.12 -1.66 -29.49 16 14 C 0.40 14.29 6.03 133.51 0.80 15.09 16 15 N -0.51 -15.99 6.59 -191.78 -1.26 -17.26 16 16 C 0.15 3.08 11.22 84.75 0.95 4.03 16 17 C -0.01 -0.18 11.21 84.79 0.95 0.77 16 18 N -0.38 -10.55 10.42 -187.89 -1.96 -12.50 16 19 C 0.01 0.29 6.61 40.77 0.27 0.55 16 20 C 0.29 10.28 14.32 88.33 1.27 11.54 16 21 N -0.44 -16.52 18.54 19.00 0.35 -16.17 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.33 5.59 -2.39 -0.01 1.32 16 24 H 0.06 2.13 7.68 -2.38 -0.02 2.11 16 25 H 0.08 3.92 5.95 -2.39 -0.01 3.91 16 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 28 H 0.40 16.21 7.38 -92.71 -0.68 15.52 16 29 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -61.29 264.91 4.02 -57.26 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.49 Total: 13.32 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.79 Total: 9.21 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -4.28 Total: -123.58 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -61.29 4.02 -57.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273851657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.816 kcal (2) G-P(sol) polarization free energy of solvation -61.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds