Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46787 * 2 1 4 4 C 1.50700 * 109.47041 * 119.99572 * 2 1 3 5 5 H 1.08005 * 119.99408 * 119.99935 * 4 2 1 6 6 C 1.37876 * 120.00392 * 300.00228 * 4 2 1 7 7 N 1.31510 * 119.99623 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47111 * 89.99694 * 8 6 4 10 10 H 1.48499 * 109.47080 * 209.99684 * 8 6 4 11 11 H 1.48496 * 109.47148 * 329.99566 * 8 6 4 12 12 N 1.46493 * 109.46924 * 239.99730 * 2 1 3 13 13 C 1.46502 * 120.00066 * 306.06177 * 12 2 1 14 14 C 1.38983 * 119.99707 * 126.06094 * 12 2 1 15 15 C 1.39614 * 120.02598 * 12.41532 * 14 12 2 16 16 N 1.31940 * 120.12058 * 179.97438 * 15 14 12 17 17 C 1.32158 * 120.18699 * 0.02562 * 16 15 14 18 18 C 1.39378 * 120.04992 * 359.97438 * 17 16 15 19 19 C 1.43200 * 120.05838 * 179.97438 * 18 17 16 20 20 N 7.10639 * 115.00560 * 261.62932 * 2 1 3 21 21 N 1.32383 * 120.02057 * 192.13727 * 14 12 2 22 22 H 1.09001 * 109.47544 * 59.99870 * 1 2 3 23 23 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46963 * 300.00209 * 1 2 3 25 25 H 0.97000 * 119.99567 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46820 * 90.00312 * 13 12 2 27 27 H 1.09006 * 109.46832 * 209.99589 * 13 12 2 28 28 H 1.08993 * 109.47106 * 329.99950 * 13 12 2 29 29 H 1.08004 * 119.93599 * 359.95774 * 15 14 12 30 30 H 1.08001 * 119.97383 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.6305 -0.5439 4.4118 10 1 1.3445 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0183 -0.6906 -1.1961 13 6 1.5583 -2.0487 -1.4969 14 6 2.9179 -0.0575 -2.0455 15 6 3.5549 1.1164 -1.6388 16 7 4.4097 1.7187 -2.4435 17 6 4.6665 1.2145 -3.6378 18 6 4.0347 0.0429 -4.0513 19 6 4.3124 -0.5033 -5.3456 20 7 4.5339 -0.9376 -6.3717 21 7 3.1754 -0.5701 -3.2385 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7095 1.1619 3.4844 26 1 0.6610 -2.0000 -2.1138 27 1 2.3397 -2.5863 -2.0340 28 1 1.3320 -2.5699 -0.5669 29 1 3.3475 1.5323 -0.6639 30 1 5.3664 1.7106 -4.2938 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401334939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = 91.962606 kcal Electronic energy + Delta-G solvation = -15542.622056 eV Core-core repulsion = 12952.927261 eV Total energy + Delta-G solvation = -2589.694795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77096 -37.17070 -36.41486 -34.04407 -32.97080 -30.84047 -29.21726 -26.56781 -25.38746 -24.94019 -22.81765 -20.78673 -18.60726 -17.45604 -16.76319 -16.33777 -15.83474 -15.05372 -14.75254 -13.76560 -13.60551 -13.37998 -12.98089 -12.91781 -12.67783 -12.52881 -11.80484 -11.61314 -11.26107 -11.09280 -11.05202 -10.94275 -10.79547 -10.39458 -10.30704 -9.83475 -9.17063 -8.90454 -8.63519 -7.09181 -6.27215 -4.38143 0.68473 1.59486 2.47704 3.00624 3.17036 3.24997 3.26392 3.40492 3.76917 4.15356 4.24538 4.66404 4.78448 5.02505 5.11193 5.42644 5.71891 5.87086 6.08056 6.33401 6.44087 6.49515 6.63783 6.77789 7.04400 7.18937 7.34848 7.49224 7.70625 7.76993 7.95538 8.12195 8.21568 8.68186 9.30631 10.76049 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.038313 B = 0.006511 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.650750 B = 4299.276346 C = 4462.713146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.265 3.735 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.566 5.566 13 C 0.102 3.898 14 C 0.374 3.626 15 C 0.033 3.967 16 N -0.404 5.404 17 C 0.004 3.996 18 C 0.183 3.817 19 C 0.282 3.718 20 N -0.403 5.403 21 N -0.493 5.493 22 H 0.014 0.986 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.267 0.733 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.184 0.816 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -0.074 -5.640 6.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.072 0.928 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.273 5.273 13 C -0.041 4.041 14 C 0.130 3.870 15 C -0.141 4.141 16 N -0.116 5.116 17 C -0.158 4.158 18 C 0.042 3.958 19 C -0.036 4.036 20 N -0.080 5.080 21 N -0.220 5.220 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.201 0.799 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.405 -0.738 -6.923 7.365 hybrid contribution 0.081 -0.423 1.259 1.331 sum 2.486 -1.162 -5.664 6.293 Atomic orbital electron populations 1.22127 0.97288 1.00217 1.01158 1.19173 0.91625 0.93089 0.79635 0.92842 1.21335 1.32419 1.13629 0.89850 0.91835 1.24878 0.94581 0.94907 0.99066 1.69843 1.35803 1.22447 1.24279 0.86447 0.78715 0.79993 0.82042 1.20410 1.21041 1.19854 1.47405 1.41732 1.14986 1.23219 1.21467 0.98706 0.82923 1.01051 1.19403 0.89659 0.90595 0.87325 1.23795 0.94711 0.94267 1.01306 1.68366 1.11573 1.29154 1.02483 1.23053 1.02707 0.94713 0.95292 1.16993 0.96561 0.93703 0.88555 1.24968 0.93504 0.93078 0.92023 1.81201 1.08159 1.07319 1.11325 1.67850 1.17228 1.33679 1.03238 0.96651 0.94562 0.88359 0.92349 0.93974 0.92216 0.90413 0.79940 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.87 37.16 0.33 -2.80 16 2 C 0.26 5.68 2.46 -69.09 -0.17 5.51 16 3 H 0.05 1.20 5.60 -51.93 -0.29 0.91 16 4 C -0.53 -12.68 8.09 -34.44 -0.28 -12.96 16 5 H 0.06 1.54 7.76 -52.48 -0.41 1.13 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -22.22 11.32 55.43 0.63 -21.60 16 8 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 N -0.57 -10.86 2.87 -175.27 -0.50 -11.37 16 13 C 0.10 1.75 9.23 59.85 0.55 2.30 16 14 C 0.37 6.82 7.30 -154.87 -1.13 5.69 16 15 C 0.03 0.58 10.38 -16.99 -0.18 0.40 16 16 N -0.40 -6.52 10.48 -12.53 -0.13 -6.65 16 17 C 0.00 0.06 10.91 -16.99 -0.19 -0.13 16 18 C 0.18 2.78 6.58 -84.91 -0.56 2.22 16 19 C 0.28 4.13 15.56 -22.47 -0.35 3.78 16 20 N -0.40 -6.28 18.54 41.84 0.78 -5.50 16 21 N -0.49 -8.57 9.39 -10.15 -0.10 -8.66 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 23 H 0.04 0.73 7.50 -51.93 -0.39 0.34 16 24 H 0.10 2.28 6.07 -51.93 -0.32 1.96 16 25 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.98 7.60 -51.93 -0.39 0.58 16 28 H 0.08 1.35 7.44 -51.93 -0.39 0.97 16 29 H 0.18 3.25 6.04 -52.48 -0.32 2.94 16 30 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 268.81 15.07 4.05 4.05 Total: -1.00 -25.00 268.81 -5.26 -30.26 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.90 Total: -0.46 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.06 Total: 5.60 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.67 Total: -53.77 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.00 -5.26 -30.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401334939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.224 kcal (2) G-P(sol) polarization free energy of solvation -24.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds