Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46787 * 2 1 4 4 C 1.50700 * 109.47041 * 119.99572 * 2 1 3 5 5 H 1.08005 * 119.99408 * 119.99935 * 4 2 1 6 6 C 1.37876 * 120.00392 * 300.00228 * 4 2 1 7 7 N 1.31510 * 119.99623 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47111 * 89.99694 * 8 6 4 10 10 H 1.48499 * 109.47080 * 209.99684 * 8 6 4 11 11 H 1.48496 * 109.47148 * 329.99566 * 8 6 4 12 12 N 1.46493 * 109.46924 * 239.99730 * 2 1 3 13 13 C 1.46502 * 120.00066 * 306.06177 * 12 2 1 14 14 C 1.38983 * 119.99707 * 126.06094 * 12 2 1 15 15 C 1.39614 * 120.02598 * 12.41532 * 14 12 2 16 16 N 1.31940 * 120.12058 * 179.97438 * 15 14 12 17 17 C 1.32158 * 120.18699 * 0.02562 * 16 15 14 18 18 C 1.39378 * 120.04992 * 359.97438 * 17 16 15 19 19 C 1.43200 * 120.05838 * 179.97438 * 18 17 16 20 20 N 7.10639 * 115.00560 * 261.62932 * 2 1 3 21 21 N 1.32383 * 120.02057 * 192.13727 * 14 12 2 22 22 H 1.09001 * 109.47544 * 59.99870 * 1 2 3 23 23 H 1.09003 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46963 * 300.00209 * 1 2 3 25 25 H 0.97000 * 119.99567 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46820 * 90.00312 * 13 12 2 27 27 H 1.09006 * 109.46832 * 209.99589 * 13 12 2 28 28 H 1.08993 * 109.47106 * 329.99950 * 13 12 2 29 29 H 1.08004 * 119.93599 * 359.95774 * 15 14 12 30 30 H 1.08001 * 119.97383 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.6305 -0.5439 4.4118 10 1 1.3445 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0183 -0.6906 -1.1961 13 6 1.5583 -2.0487 -1.4969 14 6 2.9179 -0.0575 -2.0455 15 6 3.5549 1.1164 -1.6388 16 7 4.4097 1.7187 -2.4435 17 6 4.6665 1.2145 -3.6378 18 6 4.0347 0.0429 -4.0513 19 6 4.3124 -0.5033 -5.3456 20 7 4.5339 -0.9376 -6.3717 21 7 3.1754 -0.5701 -3.2385 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7095 1.1619 3.4844 26 1 0.6610 -2.0000 -2.1138 27 1 2.3397 -2.5863 -2.0340 28 1 1.3320 -2.5699 -0.5669 29 1 3.3475 1.5323 -0.6639 30 1 5.3664 1.7106 -4.2938 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401334939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = 78.459609 kcal Electronic energy + Delta-G solvation = -15543.207590 eV Core-core repulsion = 12952.927261 eV Total energy + Delta-G solvation = -2590.280329 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.09307 -38.60843 -37.69068 -35.49700 -34.58105 -32.28252 -30.77526 -27.95796 -27.19793 -26.24197 -24.24848 -22.29596 -20.00728 -18.85079 -18.31469 -17.83041 -17.25314 -16.50406 -16.32322 -15.26497 -15.02497 -14.68433 -14.34100 -14.20506 -14.08198 -13.84464 -13.50608 -13.10331 -12.85926 -12.72264 -12.59543 -12.41646 -12.30794 -12.12073 -11.99052 -11.36432 -10.73026 -10.50579 -10.20272 -8.54398 -8.08436 -6.26750 -0.59184 0.29081 1.25131 1.46058 1.50065 1.56879 1.77951 2.06263 2.42196 2.50789 2.87729 3.16946 3.38777 3.51647 3.81806 4.13908 4.46268 4.51235 4.72769 4.78023 4.97334 5.02902 5.05893 5.22261 5.41572 5.66258 5.71621 5.99644 6.11292 6.19635 6.44339 6.61799 6.76264 6.93321 7.44586 8.90522 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.038313 B = 0.006511 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.650750 B = 4299.276346 C = 4462.713146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.042 0.958 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.580 5.580 13 C 0.107 3.893 14 C 0.361 3.639 15 C 0.024 3.976 16 N -0.409 5.409 17 C 0.028 3.972 18 C 0.184 3.816 19 C 0.298 3.702 20 N -0.413 5.413 21 N -0.500 5.500 22 H 0.026 0.974 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.266 0.734 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -0.145 -6.692 7.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.170 3.830 3 H 0.060 0.940 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.289 5.289 13 C -0.036 4.036 14 C 0.119 3.881 15 C -0.148 4.148 16 N -0.121 5.121 17 C -0.134 4.134 18 C 0.042 3.958 19 C -0.020 4.020 20 N -0.091 5.091 21 N -0.226 5.226 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.190 0.810 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.330 -0.812 -7.983 8.687 hybrid contribution -0.113 -0.371 1.438 1.489 sum 3.217 -1.183 -6.545 7.388 Atomic orbital electron populations 1.21956 0.97081 1.00139 1.00531 1.18876 0.91686 0.92451 0.79972 0.94031 1.21536 1.31949 1.13268 0.90976 0.92705 1.25465 0.94907 0.95507 1.01209 1.69938 1.36728 1.23416 1.24583 0.85644 0.78028 0.79019 0.79449 1.20474 1.21008 1.19770 1.47180 1.42907 1.15629 1.23160 1.21454 0.99210 0.82094 1.00805 1.19371 0.90075 0.91019 0.87622 1.23633 0.95393 0.94417 1.01380 1.68429 1.11281 1.29222 1.03178 1.23710 1.01564 0.93605 0.94531 1.17118 0.96277 0.94035 0.88378 1.24679 0.93072 0.92677 0.91537 1.81238 1.08566 1.07580 1.11673 1.67773 1.17637 1.34093 1.03106 0.95493 0.94296 0.90614 0.92457 0.93092 0.91651 0.91196 0.81027 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 8.87 71.98 0.64 -5.19 16 2 C 0.27 11.73 2.46 44.25 0.11 11.84 16 3 H 0.04 1.90 5.60 -2.39 -0.01 1.89 16 4 C -0.54 -25.74 8.09 25.60 0.21 -25.54 16 5 H 0.05 2.67 7.76 -2.91 -0.02 2.64 16 6 C 0.03 1.47 5.30 84.66 0.45 1.91 16 7 N -0.91 -46.00 11.32 21.45 0.24 -45.76 16 8 Si 0.95 39.65 29.54 68.60 2.03 41.67 16 9 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.58 -22.08 2.87 -708.43 -2.03 -24.11 16 13 C 0.11 3.62 9.23 127.77 1.18 4.80 16 14 C 0.36 12.87 7.30 133.19 0.97 13.85 16 15 C 0.02 0.81 10.38 85.01 0.88 1.69 16 16 N -0.41 -12.36 10.48 -193.54 -2.03 -14.39 16 17 C 0.03 0.70 10.91 84.92 0.93 1.63 16 18 C 0.18 5.08 6.58 40.45 0.27 5.35 16 19 C 0.30 7.91 15.56 88.33 1.37 9.28 16 20 N -0.41 -11.84 18.54 19.00 0.35 -11.49 16 21 N -0.50 -16.50 9.39 -186.02 -1.75 -18.25 16 22 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 23 H 0.04 1.56 7.50 -2.39 -0.02 1.54 16 24 H 0.08 3.55 6.07 -2.38 -0.01 3.54 16 25 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 2.08 7.60 -2.38 -0.02 2.07 16 28 H 0.07 2.42 7.44 -2.39 -0.02 2.40 16 29 H 0.17 6.23 6.04 -2.91 -0.02 6.21 16 30 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -51.72 268.81 4.99 -46.74 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.17 Total: 5.96 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 7.00 Total: 19.63 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.21 Total: -113.99 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -51.72 4.99 -46.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401334939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.197 kcal (2) G-P(sol) polarization free energy of solvation -51.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds