Wall clock time and date at job start Sun Mar 29 2020 21:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36935 * 120.00296 * 2 1 4 4 H 1.08004 * 120.00441 * 200.36947 * 3 2 1 5 5 C 1.38817 * 119.99773 * 20.37082 * 3 2 1 6 6 N 1.31616 * 119.99950 * 14.97463 * 5 3 2 7 7 Si 1.86800 * 120.00061 * 194.98212 * 5 3 2 8 8 H 1.48504 * 109.47332 * 84.99934 * 7 5 3 9 9 H 1.48501 * 109.47210 * 205.00065 * 7 5 3 10 10 H 1.48504 * 109.46778 * 325.00061 * 7 5 3 11 11 C 1.46509 * 119.99935 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47059 * 269.99538 * 11 2 1 13 13 N 1.30798 * 126.24987 * 269.97974 * 12 11 2 14 14 N 1.28683 * 110.29298 * 179.97438 * 13 12 11 15 15 C 1.32305 * 109.48149 * 0.05102 * 14 13 12 16 16 C 1.40821 * 133.46917 * 179.97438 * 15 14 13 17 17 C 1.36014 * 119.22744 * 179.97438 * 16 15 14 18 18 C 1.40545 * 119.75211 * 0.02562 * 17 16 15 19 19 C 1.34954 * 120.36510 * 359.97438 * 18 17 16 20 20 N 1.36064 * 126.24250 * 89.99958 * 12 11 2 21 21 H 1.09003 * 109.47314 * 275.08748 * 1 2 3 22 22 H 1.09000 * 109.47268 * 35.09079 * 1 2 3 23 23 H 1.09003 * 109.47280 * 155.08977 * 1 2 3 24 24 H 0.97001 * 119.99909 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46925 * 150.00164 * 11 2 1 26 26 H 1.08991 * 109.46990 * 29.99939 * 11 2 1 27 27 H 1.08005 * 120.38196 * 359.96774 * 16 15 14 28 28 H 1.07999 * 120.12601 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.81939 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.75017 * 179.74255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5207 2.3505 0.4185 6 7 0.3875 2.2835 1.0846 7 14 2.2825 4.0126 0.0360 8 1 1.8683 4.4462 -1.3226 9 1 1.8224 5.0098 1.0356 10 1 3.7625 3.9032 0.0910 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4200 13 7 3.4913 -1.4009 2.1492 14 7 3.3909 -1.9348 3.3157 15 6 2.2610 -2.6188 3.3921 16 6 1.6580 -3.3830 4.4097 17 6 0.4583 -3.9779 4.1711 18 6 -0.1600 -3.8233 2.9185 19 6 0.4297 -3.0880 1.9527 20 7 1.6324 -2.4856 2.1782 21 1 -0.3634 0.0911 1.0236 22 1 -0.3634 0.8409 -0.5908 23 1 -0.3634 -0.9321 -0.4329 24 1 -0.0522 3.0973 1.3767 25 1 3.1499 -1.1382 -0.5143 26 1 1.6084 -2.0281 -0.5147 27 1 2.1426 -3.4954 5.3683 28 1 -0.0169 -4.5675 4.9411 29 1 -1.1128 -4.2949 2.7281 30 1 -0.0523 -2.9792 0.9924 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610432609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:35 Heat of formation + Delta-G solvation = 135.956073 kcal Electronic energy + Delta-G solvation = -16020.704678 eV Core-core repulsion = 13432.917583 eV Total energy + Delta-G solvation = -2587.787095 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.87642 -37.73354 -35.85553 -33.53457 -31.60274 -30.67596 -29.22018 -26.37114 -25.85917 -23.83623 -22.79121 -22.04513 -20.35440 -17.63475 -16.78264 -16.74857 -15.94565 -15.62562 -14.86172 -14.61260 -13.86813 -13.61184 -13.32805 -12.44162 -12.14204 -12.07324 -11.58609 -11.41887 -11.06646 -10.98499 -10.80087 -10.76367 -10.57261 -10.10193 -9.98492 -9.85914 -9.07621 -8.66890 -7.63300 -7.02552 -5.85318 -3.29355 0.93332 1.54792 2.84455 3.32141 3.39667 3.43597 3.46760 3.72302 4.45373 4.47537 4.74936 4.92542 5.07274 5.19264 5.26202 5.43095 5.45973 5.79185 5.81364 6.05718 6.19986 6.29630 6.44666 6.49126 6.59703 6.71375 7.15774 7.40813 7.50688 7.75847 8.22135 9.07582 9.22975 9.67725 10.12845 11.20185 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.035702 B = 0.007880 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.088873 B = 3552.647541 C = 3763.668700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.579 5.579 3 C -0.257 4.257 4 H 0.079 0.921 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.912 3.088 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.223 3.777 12 C 0.161 3.839 13 N -0.255 5.255 14 N -0.298 5.298 15 C 0.167 3.833 16 C -0.078 4.078 17 C -0.099 4.099 18 C -0.160 4.160 19 C 0.087 3.913 20 N -0.390 5.390 21 H 0.029 0.971 22 H 0.053 0.947 23 H 0.000 1.000 24 H 0.255 0.745 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -13.105 1.462 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.299 5.299 3 C -0.386 4.386 4 H 0.097 0.903 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.741 3.259 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.201 1.201 11 C 0.091 3.909 12 C -0.106 4.106 13 N -0.094 5.094 14 N -0.143 5.143 15 C -0.083 4.083 16 C -0.100 4.100 17 C -0.124 4.124 18 C -0.182 4.182 19 C -0.036 4.036 20 N -0.071 5.071 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.018 0.982 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.165 0.835 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.426 -12.173 1.804 12.543 hybrid contribution -1.073 0.522 -0.084 1.196 sum -3.499 -11.651 1.719 12.286 Atomic orbital electron populations 1.20931 0.81989 0.96031 0.99677 1.44373 1.02144 1.00360 1.83050 1.19340 0.97590 0.84003 1.37698 0.90318 1.25075 0.97724 0.98928 0.97647 1.70082 1.18768 1.27286 1.38766 0.86147 0.79040 0.83170 0.77523 1.21191 1.21707 1.20118 1.19720 0.98453 0.88714 0.83999 1.27669 0.87612 0.94311 1.00970 1.74177 1.19841 1.17237 0.98100 1.74846 1.14561 1.11771 1.13090 1.22301 0.93993 1.03978 0.88060 1.20151 0.95627 0.96751 0.97433 1.21005 0.94712 0.99520 0.97178 1.20754 1.01714 1.02332 0.93395 1.21604 0.85371 0.95018 1.01597 1.43949 1.16031 1.34056 1.13106 0.95287 0.92797 0.98192 0.93527 0.89376 0.92164 0.83478 0.84324 0.83451 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 9.02 59.84 0.54 4.23 16 2 N -0.58 -14.24 2.91 -182.50 -0.53 -14.78 16 3 C -0.26 -7.08 9.68 -15.06 -0.15 -7.23 16 4 H 0.08 2.15 7.86 -52.48 -0.41 1.73 16 5 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 6 N -0.91 -26.52 10.67 55.49 0.59 -25.93 16 7 Si 0.91 22.26 29.58 -169.99 -5.03 17.24 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.22 4.55 6.23 -5.19 -0.03 4.52 16 12 C 0.16 3.51 7.72 -154.23 -1.19 2.32 16 13 N -0.25 -6.24 12.19 32.94 0.40 -5.84 16 14 N -0.30 -6.89 12.31 31.14 0.38 -6.51 16 15 C 0.17 3.27 7.92 -156.06 -1.24 2.04 16 16 C -0.08 -1.13 10.11 -39.40 -0.40 -1.53 16 17 C -0.10 -1.14 10.06 -39.51 -0.40 -1.53 16 18 C -0.16 -1.83 9.98 -39.88 -0.40 -2.23 16 19 C 0.09 1.27 10.91 -16.69 -0.18 1.09 16 20 N -0.39 -7.46 2.95 -59.73 -0.18 -7.64 16 21 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 22 H 0.05 1.35 7.21 -51.93 -0.37 0.98 16 23 H 0.00 -0.01 7.84 -51.93 -0.41 -0.41 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 25 H 0.09 1.75 8.03 -51.93 -0.42 1.33 16 26 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 27 H 0.15 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 265.35 15.07 4.00 4.00 Total: -1.00 -34.33 265.35 -7.12 -41.44 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -3.23 Total: -3.73 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.53 Total: 1.73 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.67 Total: -60.68 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.33 -7.12 -41.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610432609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.400 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds