Wall clock time and date at job start Sun Mar 29 2020 21:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36935 * 120.00296 * 2 1 4 4 H 1.08004 * 120.00441 * 200.36947 * 3 2 1 5 5 C 1.38817 * 119.99773 * 20.37082 * 3 2 1 6 6 N 1.31616 * 119.99950 * 14.97463 * 5 3 2 7 7 Si 1.86800 * 120.00061 * 194.98212 * 5 3 2 8 8 H 1.48504 * 109.47332 * 84.99934 * 7 5 3 9 9 H 1.48501 * 109.47210 * 205.00065 * 7 5 3 10 10 H 1.48504 * 109.46778 * 325.00061 * 7 5 3 11 11 C 1.46509 * 119.99935 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47059 * 269.99538 * 11 2 1 13 13 N 1.30798 * 126.24987 * 269.97974 * 12 11 2 14 14 N 1.28683 * 110.29298 * 179.97438 * 13 12 11 15 15 C 1.32305 * 109.48149 * 0.05102 * 14 13 12 16 16 C 1.40821 * 133.46917 * 179.97438 * 15 14 13 17 17 C 1.36014 * 119.22744 * 179.97438 * 16 15 14 18 18 C 1.40545 * 119.75211 * 0.02562 * 17 16 15 19 19 C 1.34954 * 120.36510 * 359.97438 * 18 17 16 20 20 N 1.36064 * 126.24250 * 89.99958 * 12 11 2 21 21 H 1.09003 * 109.47314 * 275.08748 * 1 2 3 22 22 H 1.09000 * 109.47268 * 35.09079 * 1 2 3 23 23 H 1.09003 * 109.47280 * 155.08977 * 1 2 3 24 24 H 0.97001 * 119.99909 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46925 * 150.00164 * 11 2 1 26 26 H 1.08991 * 109.46990 * 29.99939 * 11 2 1 27 27 H 1.08005 * 120.38196 * 359.96774 * 16 15 14 28 28 H 1.07999 * 120.12601 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.81939 * 180.02562 * 18 17 16 30 30 H 1.08000 * 119.75017 * 179.74255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5207 2.3505 0.4185 6 7 0.3875 2.2835 1.0846 7 14 2.2825 4.0126 0.0360 8 1 1.8683 4.4462 -1.3226 9 1 1.8224 5.0098 1.0356 10 1 3.7625 3.9032 0.0910 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7044 1.4200 13 7 3.4913 -1.4009 2.1492 14 7 3.3909 -1.9348 3.3157 15 6 2.2610 -2.6188 3.3921 16 6 1.6580 -3.3830 4.4097 17 6 0.4583 -3.9779 4.1711 18 6 -0.1600 -3.8233 2.9185 19 6 0.4297 -3.0880 1.9527 20 7 1.6324 -2.4856 2.1782 21 1 -0.3634 0.0911 1.0236 22 1 -0.3634 0.8409 -0.5908 23 1 -0.3634 -0.9321 -0.4329 24 1 -0.0522 3.0973 1.3767 25 1 3.1499 -1.1382 -0.5143 26 1 1.6084 -2.0281 -0.5147 27 1 2.1426 -3.4954 5.3683 28 1 -0.0169 -4.5675 4.9411 29 1 -1.1128 -4.2949 2.7281 30 1 -0.0523 -2.9792 0.9924 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610432609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:35 Heat of formation + Delta-G solvation = 113.990862 kcal Electronic energy + Delta-G solvation = -16021.657161 eV Core-core repulsion = 13432.917583 eV Total energy + Delta-G solvation = -2588.739578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.31856 -38.97693 -37.69094 -34.93159 -33.45579 -32.03103 -30.70401 -28.10111 -27.73929 -25.04464 -24.17342 -23.79962 -21.89869 -19.13685 -18.63040 -17.97956 -17.48714 -16.93018 -16.49447 -15.81466 -15.47967 -15.41184 -15.14649 -13.91877 -13.46153 -13.39880 -13.23419 -12.89288 -12.88433 -12.64673 -12.47065 -12.36012 -12.10617 -12.07035 -11.88993 -11.40442 -10.73354 -10.44114 -9.11118 -8.87209 -7.94206 -5.40460 -0.17453 0.28872 1.41687 1.43650 1.52316 1.53369 1.84052 2.46733 2.50190 3.16380 3.30262 3.63565 3.66391 3.73586 3.92381 4.04365 4.17461 4.49229 4.70308 4.74308 4.79189 4.94059 5.11784 5.19768 5.24041 5.25467 5.53915 5.59586 5.65392 6.10485 6.21560 7.04292 7.67790 7.71498 8.10420 9.09065 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.035702 B = 0.007880 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.088873 B = 3552.647541 C = 3763.668700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.072 0.928 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.273 1.273 9 H -0.297 1.297 10 H -0.275 1.275 11 C 0.227 3.773 12 C 0.140 3.860 13 N -0.303 5.303 14 N -0.358 5.358 15 C 0.166 3.834 16 C -0.113 4.113 17 C -0.062 4.062 18 C -0.134 4.134 19 C 0.049 3.951 20 N -0.392 5.392 21 H -0.004 1.004 22 H 0.026 0.974 23 H 0.050 0.950 24 H 0.248 0.752 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.167 0.833 28 H 0.193 0.807 29 H 0.201 0.799 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -15.710 1.757 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.317 5.317 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.199 1.199 9 H -0.224 1.224 10 H -0.200 1.200 11 C 0.097 3.903 12 C -0.128 4.128 13 N -0.141 5.141 14 N -0.203 5.203 15 C -0.085 4.085 16 C -0.135 4.135 17 C -0.086 4.086 18 C -0.155 4.155 19 C -0.072 4.072 20 N -0.072 5.072 21 H 0.014 0.986 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.185 0.815 28 H 0.210 0.790 29 H 0.218 0.782 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.554 -14.820 2.087 15.644 hybrid contribution -0.543 1.017 -0.076 1.155 sum -5.097 -13.803 2.012 14.851 Atomic orbital electron populations 1.20679 0.81447 0.97363 0.97522 1.44458 1.02707 1.00896 1.83627 1.19560 0.97394 0.85685 1.36607 0.91009 1.25773 0.98531 1.01916 0.98300 1.70239 1.20110 1.27328 1.40508 0.85255 0.78130 0.79449 0.77484 1.19937 1.22402 1.20049 1.19801 0.98752 0.88099 0.83691 1.27350 0.88309 0.95985 1.01182 1.73990 1.22116 1.18703 0.99260 1.74679 1.17462 1.14881 1.13286 1.23046 0.93208 1.03042 0.89164 1.20624 0.97487 0.97972 0.97395 1.21736 0.92442 0.96384 0.98063 1.21534 1.02566 0.99287 0.92065 1.22394 0.84425 0.96296 1.04132 1.43991 1.17050 1.33730 1.12407 0.98607 0.95535 0.93182 0.94249 0.89692 0.87812 0.81518 0.78985 0.78232 0.79836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.05 9.02 127.77 1.15 9.21 16 2 N -0.60 -29.44 2.91 -731.31 -2.13 -31.57 16 3 C -0.26 -14.80 9.68 84.03 0.81 -13.98 16 4 H 0.07 4.04 7.86 -2.91 -0.02 4.02 16 5 C -0.05 -2.88 5.06 84.86 0.43 -2.45 16 6 N -0.94 -56.41 10.67 21.65 0.23 -56.18 16 7 Si 0.97 46.94 29.58 68.60 2.03 48.97 16 8 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 9 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 C 0.23 9.19 6.23 85.63 0.53 9.72 16 12 C 0.14 6.19 7.72 137.71 1.06 7.25 16 13 N -0.30 -15.48 12.19 -49.69 -0.61 -16.09 16 14 N -0.36 -17.26 12.31 -55.39 -0.68 -17.94 16 15 C 0.17 6.47 7.92 134.07 1.06 7.53 16 16 C -0.11 -2.99 10.11 22.38 0.23 -2.76 16 17 C -0.06 -1.05 10.06 22.32 0.22 -0.83 16 18 C -0.13 -2.26 9.98 22.08 0.22 -2.04 16 19 C 0.05 1.26 10.91 83.23 0.91 2.17 16 20 N -0.39 -14.57 2.95 -342.88 -1.01 -15.58 16 21 H 0.00 -0.23 7.40 -2.39 -0.02 -0.25 16 22 H 0.03 1.33 7.21 -2.39 -0.02 1.31 16 23 H 0.05 1.76 7.84 -2.39 -0.02 1.74 16 24 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.08 3.42 8.03 -2.39 -0.02 3.40 16 26 H 0.10 3.20 7.86 -2.39 -0.02 3.18 16 27 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 28 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 29 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 30 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -81.16 265.35 5.61 -75.55 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.14 Total: -1.00 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.63 Total: 13.83 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -4.20 Total: -137.35 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -81.16 5.61 -75.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610432609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.546 kcal (2) G-P(sol) polarization free energy of solvation -81.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds