Wall clock time and date at job start Sun Mar 29 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30102 * 124.97544 * 2 1 4 4 C 1.35671 * 109.51676 * 179.72791 * 3 2 1 5 5 C 1.40060 * 133.75119 * 180.02562 * 4 3 2 6 6 C 1.36849 * 118.38518 * 179.97438 * 5 4 3 7 7 C 1.39581 * 119.63212 * 0.06865 * 6 5 4 8 8 N 1.38773 * 119.41886 * 179.97438 * 7 6 5 9 9 C 1.36887 * 120.00133 * 354.24487 * 8 7 6 10 10 H 1.07999 * 119.99975 * 5.13029 * 9 8 7 11 11 C 1.38796 * 120.00005 * 185.13734 * 9 8 7 12 12 N 1.31574 * 120.00323 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99888 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46895 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46896 * 119.99849 * 13 11 9 16 16 H 1.48503 * 109.47231 * 239.99897 * 13 11 9 17 17 N 1.32361 * 121.16164 * 359.94146 * 7 6 5 18 18 C 1.32414 * 121.34202 * 0.02562 * 17 7 6 19 19 N 1.36211 * 124.96623 * 179.68848 * 2 1 3 20 20 C 1.46500 * 126.28814 * 0.25082 * 19 2 1 21 21 H 1.08999 * 109.46826 * 90.02747 * 1 2 3 22 22 H 1.09004 * 109.47213 * 210.02592 * 1 2 3 23 23 H 1.08996 * 109.47104 * 330.03160 * 1 2 3 24 24 H 1.08005 * 120.80625 * 359.96375 * 5 4 3 25 25 H 1.07997 * 120.18932 * 180.02562 * 6 5 4 26 26 H 0.97001 * 120.00103 * 174.24882 * 8 7 6 27 27 H 0.96998 * 120.00606 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.46996 * 90.02552 * 20 19 2 29 29 H 1.09002 * 109.46933 * 210.02594 * 20 19 2 30 30 H 1.08992 * 109.47095 * 330.02003 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0661 0.0000 4 6 3.5604 0.7044 0.0061 5 6 4.7636 1.4214 0.0093 6 6 5.9387 0.7202 0.0161 7 6 5.9097 -0.6753 0.0183 8 7 7.1040 -1.3820 0.0247 9 6 8.2942 -0.7156 -0.0900 10 1 8.3095 0.3642 -0.1021 11 6 9.4813 -1.4276 -0.1910 12 7 9.4627 -2.7432 -0.1769 13 14 11.1054 -0.5182 -0.3482 14 1 10.8559 0.9456 -0.3398 15 1 11.9857 -0.8764 0.7928 16 1 11.7658 -0.9010 -1.6221 17 7 4.7631 -1.3365 0.0150 18 6 3.6015 -0.7009 0.0090 19 7 2.2876 -1.1162 0.0061 20 6 1.8168 -2.5035 0.0084 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5133 24 1 4.7639 2.5014 0.0062 25 1 6.8834 1.2435 0.0191 26 1 7.0955 -2.3481 0.1104 27 1 10.2923 -3.2408 -0.2471 28 1 1.7042 -2.8507 -1.0186 29 1 2.5408 -3.1320 0.5271 30 1 0.8554 -2.5600 0.5186 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533429.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:32 Heat of formation + Delta-G solvation = 89.870401 kcal Electronic energy + Delta-G solvation = -15454.333719 eV Core-core repulsion = 12864.548200 eV Total energy + Delta-G solvation = -2589.785520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35099 -38.01335 -34.88443 -33.63946 -31.87807 -30.92781 -30.27107 -26.67161 -26.22486 -24.63291 -22.06589 -21.21346 -19.40444 -18.19228 -16.88308 -16.34450 -15.97369 -15.54278 -14.75022 -14.00647 -13.44899 -13.24571 -13.16764 -13.11041 -12.63693 -12.36751 -12.09595 -11.96610 -11.86760 -11.55706 -11.22318 -10.53022 -10.47658 -10.00349 -9.93382 -9.87397 -8.62314 -8.11604 -7.91527 -6.77749 -6.69601 -3.89633 1.88112 2.43800 3.03050 3.06842 3.12398 3.15997 3.55475 3.93084 4.66574 4.72754 4.79257 5.06441 5.16537 5.18848 5.41587 5.50818 5.64711 5.72232 5.81773 5.98791 6.07340 6.18195 6.43753 6.82169 7.01666 7.09143 7.23040 7.45278 7.74387 7.80304 8.52627 8.62117 8.87224 9.21144 9.60225 10.46185 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.055089 B = 0.005892 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.142450 B = 4751.036717 C = 5234.283706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.216 3.784 3 N -0.466 5.466 4 C -0.114 4.114 5 C 0.007 3.993 6 C -0.226 4.226 7 C 0.395 3.605 8 N -0.521 5.521 9 C -0.304 4.304 10 H 0.108 0.892 11 C 0.025 3.975 12 N -0.881 5.881 13 Si 0.937 3.063 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.601 5.601 18 C 0.320 3.680 19 N -0.494 5.494 20 C 0.091 3.909 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.122 0.878 25 H 0.135 0.865 26 H 0.404 0.596 27 H 0.277 0.723 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 2.024 0.369 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 N -0.186 5.186 4 C -0.237 4.237 5 C -0.020 4.020 6 C -0.252 4.252 7 C 0.145 3.855 8 N -0.129 5.129 9 C -0.434 4.434 10 H 0.125 0.875 11 C -0.180 4.180 12 N -0.517 5.517 13 Si 0.763 3.237 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.204 1.204 17 N -0.334 5.334 18 C 0.082 3.918 19 N -0.193 5.193 20 C -0.052 4.052 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.140 0.860 25 H 0.152 0.848 26 H 0.240 0.760 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.364 1.783 0.341 10.522 hybrid contribution 1.148 -0.275 -0.078 1.183 sum -9.216 1.508 0.263 9.342 Atomic orbital electron populations 1.20105 0.85378 1.03402 1.02961 1.22923 0.94743 0.80648 1.06515 1.69952 1.01500 1.27689 1.19478 1.19044 0.91846 0.91962 1.20829 1.19955 0.88924 0.98663 0.94415 1.20951 0.98391 0.93568 1.12322 1.17848 0.85005 0.87975 0.94638 1.40825 1.01085 1.09274 1.61705 1.19830 0.82405 0.93326 1.47868 0.87472 1.25380 1.00186 0.95706 0.96743 1.69714 1.29430 1.05650 1.46913 0.85681 0.80421 0.79437 0.78152 1.18917 1.20387 1.20371 1.65659 0.94778 1.39658 1.33339 1.18340 0.84928 0.90367 0.98214 1.44479 1.03753 1.06944 1.64157 1.21742 1.00538 0.80419 1.02518 0.90652 0.91209 0.89554 0.85973 0.84759 0.75992 0.91255 0.91824 0.89884 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.18 36.01 0.37 -0.29 16 2 C 0.22 3.73 7.86 -154.67 -1.22 2.51 16 3 N -0.47 -9.56 11.28 -8.12 -0.09 -9.65 16 4 C -0.11 -2.54 7.25 -84.60 -0.61 -3.15 16 5 C 0.01 0.14 10.16 -39.40 -0.40 -0.26 16 6 C -0.23 -4.97 9.25 -39.58 -0.37 -5.33 16 7 C 0.40 9.58 7.60 -155.11 -1.18 8.40 16 8 N -0.52 -13.18 5.43 -11.12 -0.06 -13.24 16 9 C -0.30 -7.60 9.53 -15.09 -0.14 -7.75 16 10 H 0.11 2.52 5.64 -52.49 -0.30 2.22 16 11 C 0.03 0.63 5.50 -17.46 -0.10 0.53 16 12 N -0.88 -23.08 13.06 55.49 0.72 -22.36 16 13 Si 0.94 19.11 29.55 -169.99 -5.02 14.08 16 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 N -0.60 -14.45 10.43 -11.46 -0.12 -14.57 16 18 C 0.32 7.18 8.00 -155.62 -1.25 5.93 16 19 N -0.49 -9.02 3.20 -120.31 -0.39 -9.41 16 20 C 0.09 1.21 10.97 59.85 0.66 1.86 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.60 7.00 -51.93 -0.36 0.23 16 23 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 25 H 0.13 2.75 5.92 -52.49 -0.31 2.44 16 26 H 0.40 10.61 8.02 -40.82 -0.33 10.28 16 27 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.73 6.99 -51.93 -0.36 0.37 16 LS Contribution 263.08 15.07 3.96 3.96 Total: -1.00 -30.33 263.08 -8.14 -38.47 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -2.91 Total: 10.26 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -4.24 Total: 2.45 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: 0.07 Total: -69.23 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.33 -8.14 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533429.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.339 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds