Wall clock time and date at job start Sun Mar 29 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30102 * 124.97544 * 2 1 4 4 C 1.35671 * 109.51676 * 179.72791 * 3 2 1 5 5 C 1.40060 * 133.75119 * 180.02562 * 4 3 2 6 6 C 1.36849 * 118.38518 * 179.97438 * 5 4 3 7 7 C 1.39581 * 119.63212 * 0.06865 * 6 5 4 8 8 N 1.38773 * 119.41886 * 179.97438 * 7 6 5 9 9 C 1.36887 * 120.00133 * 354.24487 * 8 7 6 10 10 H 1.07999 * 119.99975 * 5.13029 * 9 8 7 11 11 C 1.38796 * 120.00005 * 185.13734 * 9 8 7 12 12 N 1.31574 * 120.00323 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99888 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46895 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46896 * 119.99849 * 13 11 9 16 16 H 1.48503 * 109.47231 * 239.99897 * 13 11 9 17 17 N 1.32361 * 121.16164 * 359.94146 * 7 6 5 18 18 C 1.32414 * 121.34202 * 0.02562 * 17 7 6 19 19 N 1.36211 * 124.96623 * 179.68848 * 2 1 3 20 20 C 1.46500 * 126.28814 * 0.25082 * 19 2 1 21 21 H 1.08999 * 109.46826 * 90.02747 * 1 2 3 22 22 H 1.09004 * 109.47213 * 210.02592 * 1 2 3 23 23 H 1.08996 * 109.47104 * 330.03160 * 1 2 3 24 24 H 1.08005 * 120.80625 * 359.96375 * 5 4 3 25 25 H 1.07997 * 120.18932 * 180.02562 * 6 5 4 26 26 H 0.97001 * 120.00103 * 174.24882 * 8 7 6 27 27 H 0.96998 * 120.00606 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.46996 * 90.02552 * 20 19 2 29 29 H 1.09002 * 109.46933 * 210.02594 * 20 19 2 30 30 H 1.08992 * 109.47095 * 330.02003 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0661 0.0000 4 6 3.5604 0.7044 0.0061 5 6 4.7636 1.4214 0.0093 6 6 5.9387 0.7202 0.0161 7 6 5.9097 -0.6753 0.0183 8 7 7.1040 -1.3820 0.0247 9 6 8.2942 -0.7156 -0.0900 10 1 8.3095 0.3642 -0.1021 11 6 9.4813 -1.4276 -0.1910 12 7 9.4627 -2.7432 -0.1769 13 14 11.1054 -0.5182 -0.3482 14 1 10.8559 0.9456 -0.3398 15 1 11.9857 -0.8764 0.7928 16 1 11.7658 -0.9010 -1.6221 17 7 4.7631 -1.3365 0.0150 18 6 3.6015 -0.7009 0.0090 19 7 2.2876 -1.1162 0.0061 20 6 1.8168 -2.5035 0.0084 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5133 24 1 4.7639 2.5014 0.0062 25 1 6.8834 1.2435 0.0191 26 1 7.0955 -2.3481 0.1104 27 1 10.2923 -3.2408 -0.2471 28 1 1.7042 -2.8507 -1.0186 29 1 2.5408 -3.1320 0.5271 30 1 0.8554 -2.5600 0.5186 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533429.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:32 Heat of formation + Delta-G solvation = 71.203409 kcal Electronic energy + Delta-G solvation = -15455.143181 eV Core-core repulsion = 12864.548200 eV Total energy + Delta-G solvation = -2590.594981 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.91086 -39.72405 -36.61948 -35.13008 -33.61648 -32.56459 -31.53906 -28.09539 -27.69220 -26.39076 -23.66347 -22.91415 -20.83902 -19.93808 -18.54266 -17.89180 -17.66363 -16.97486 -16.48624 -15.61842 -15.02699 -14.73988 -14.68680 -14.10766 -13.94549 -13.83547 -13.54258 -13.34267 -13.20736 -12.95450 -12.78064 -12.32234 -12.03217 -11.66885 -11.53508 -11.45084 -10.40340 -9.84727 -9.49842 -8.53179 -8.49455 -5.80151 0.27831 0.70821 1.44818 1.48493 1.58601 1.64351 2.02365 2.26531 2.89294 3.07118 3.37391 3.43623 3.72395 3.94619 4.30639 4.40710 4.41614 4.47112 4.61870 4.71367 4.84407 4.90214 5.12572 5.13672 5.35789 5.40026 5.53477 5.69539 6.03841 6.34724 6.70116 7.07535 7.08484 7.37425 7.77645 8.67039 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.055089 B = 0.005892 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.142450 B = 4751.036717 C = 5234.283706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.245 3.755 3 N -0.503 5.503 4 C -0.125 4.125 5 C 0.009 3.991 6 C -0.238 4.238 7 C 0.383 3.617 8 N -0.548 5.548 9 C -0.320 4.320 10 H 0.117 0.883 11 C -0.024 4.024 12 N -0.926 5.926 13 Si 1.006 2.994 14 H -0.251 1.251 15 H -0.277 1.277 16 H -0.279 1.279 17 N -0.616 5.616 18 C 0.283 3.717 19 N -0.495 5.495 20 C 0.082 3.918 21 H 0.099 0.901 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.153 0.847 25 H 0.145 0.855 26 H 0.392 0.608 27 H 0.277 0.723 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 3.133 0.319 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.021 4.021 3 N -0.224 5.224 4 C -0.246 4.246 5 C -0.017 4.017 6 C -0.264 4.264 7 C 0.135 3.865 8 N -0.157 5.157 9 C -0.450 4.450 10 H 0.135 0.865 11 C -0.225 4.225 12 N -0.564 5.564 13 Si 0.829 3.171 14 H -0.175 1.175 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.349 5.349 18 C 0.045 3.955 19 N -0.193 5.193 20 C -0.059 4.059 21 H 0.118 0.882 22 H 0.122 0.878 23 H 0.117 0.883 24 H 0.170 0.830 25 H 0.163 0.837 26 H 0.225 0.775 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.964 2.905 0.292 13.289 hybrid contribution 1.442 -0.595 -0.056 1.561 sum -11.522 2.310 0.236 11.754 Atomic orbital electron populations 1.20474 0.80407 1.05764 1.05216 1.24332 0.97113 0.79505 1.01143 1.70041 1.00674 1.29114 1.22569 1.19515 0.93201 0.92263 1.19639 1.20294 0.88190 1.00174 0.93004 1.21051 0.99445 0.92703 1.13201 1.18231 0.84961 0.89026 0.94312 1.40819 1.01584 1.08564 1.64753 1.20183 0.82746 0.93882 1.48208 0.86529 1.26312 1.03326 0.96383 0.96437 1.69831 1.30111 1.07187 1.49302 0.84654 0.75919 0.78817 0.77723 1.17467 1.20308 1.20454 1.65632 0.95528 1.40582 1.33190 1.18769 0.86016 0.91140 0.99595 1.44949 1.02274 1.09185 1.62894 1.22107 1.02147 0.77589 1.04030 0.88231 0.87791 0.88274 0.82955 0.83734 0.77473 0.91330 0.90354 0.91348 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.18 71.24 0.72 -0.28 16 2 C 0.24 7.60 7.86 137.87 1.08 8.68 16 3 N -0.50 -19.51 11.28 -179.60 -2.03 -21.53 16 4 C -0.12 -5.43 7.25 39.57 0.29 -5.14 16 5 C 0.01 0.39 10.16 22.39 0.23 0.61 16 6 C -0.24 -10.56 9.25 22.27 0.21 -10.35 16 7 C 0.38 19.15 7.60 133.26 1.01 20.16 16 8 N -0.55 -28.99 5.43 -189.09 -1.03 -30.02 16 9 C -0.32 -16.57 9.53 84.04 0.80 -15.77 16 10 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 11 C -0.02 -1.24 5.50 84.87 0.47 -0.78 16 12 N -0.93 -50.60 13.06 21.65 0.28 -50.31 16 13 Si 1.01 39.82 29.55 68.60 2.03 41.85 16 14 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 15 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 16 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 17 N -0.62 -30.31 10.43 -190.16 -1.98 -32.30 16 18 C 0.28 12.57 8.00 133.83 1.07 13.65 16 19 N -0.49 -16.92 3.20 -534.56 -1.71 -18.63 16 20 C 0.08 1.93 10.97 127.77 1.40 3.34 16 21 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.10 1.08 7.00 -2.38 -0.02 1.06 16 23 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.15 5.16 8.06 -2.91 -0.02 5.13 16 25 H 0.15 5.97 5.92 -2.91 -0.02 5.95 16 26 H 0.39 21.88 8.02 -92.71 -0.74 21.13 16 27 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.12 1.73 6.99 -2.39 -0.02 1.71 16 Total: -1.00 -68.80 263.08 3.28 -65.52 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.44 Total: 31.31 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 7.28 Total: 14.12 kcal Atomic # 7 Polarization: -146.33 SS G_CDS: -6.46 Total: -152.80 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -68.80 3.28 -65.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533429.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.719 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds