Wall clock time and date at job start Sun Mar 29 2020 21:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36876 * 119.99712 * 2 1 4 4 H 1.08004 * 119.99725 * 205.19317 * 3 2 1 5 5 C 1.38788 * 120.00064 * 25.19859 * 3 2 1 6 6 N 1.31578 * 120.00123 * 11.37470 * 5 3 2 7 7 Si 1.86801 * 120.00079 * 191.37401 * 5 3 2 8 8 H 1.48504 * 109.47171 * 59.99937 * 7 5 3 9 9 H 1.48500 * 109.47197 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47239 * 300.00233 * 7 5 3 11 11 C 1.38549 * 120.00322 * 180.02562 * 2 1 3 12 12 N 1.32365 * 119.96209 * 179.97438 * 11 2 1 13 13 C 1.32228 * 122.26912 * 180.02562 * 12 11 2 14 14 C 1.37812 * 121.37030 * 359.97438 * 13 12 11 15 15 C 1.39235 * 118.98879 * 0.03731 * 14 13 12 16 16 C 1.40422 * 119.95661 * 359.97438 * 11 2 1 17 17 N 1.35468 * 134.45396 * 0.02562 * 16 11 2 18 18 C 1.30194 * 109.59830 * 179.69839 * 17 16 11 19 19 N 1.36217 * 110.03445 * 0.46096 * 18 17 16 20 20 C 1.46491 * 126.34839 * 179.81282 * 19 18 17 21 21 H 1.08995 * 109.46910 * 264.80426 * 1 2 3 22 22 H 1.09000 * 109.46941 * 24.80830 * 1 2 3 23 23 H 1.09003 * 109.46820 * 144.80591 * 1 2 3 24 24 H 0.96995 * 120.00057 * 179.97438 * 6 5 3 25 25 H 1.08009 * 119.31696 * 180.02562 * 13 12 11 26 26 H 1.08000 * 120.50552 * 180.02562 * 14 13 12 27 27 H 1.08004 * 124.98191 * 180.28956 * 18 17 16 28 28 H 1.09007 * 109.47411 * 269.68379 * 20 19 18 29 29 H 1.09000 * 109.47102 * 149.68847 * 20 19 18 30 30 H 1.09002 * 109.47627 * 29.68837 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1523 1.2299 -0.3982 5 6 1.5544 2.3301 0.5117 6 7 0.4338 2.2398 1.1955 7 14 2.3445 3.9992 0.2298 8 1 2.4358 4.2637 -1.2286 9 1 1.5186 5.0527 0.8727 10 1 3.7068 4.0081 0.8207 11 6 2.1578 -1.1998 -0.0005 12 7 3.4815 -1.1989 -0.0010 13 6 4.1882 -2.3164 -0.0021 14 6 3.5772 -3.5517 -0.0021 15 6 2.1864 -3.6165 -0.0019 16 6 1.4548 -2.4154 -0.0005 17 7 0.1428 -2.7526 -0.0005 18 6 0.0252 -4.0492 -0.0070 19 7 1.2575 -4.6297 -0.0013 20 6 1.5402 -6.0670 -0.0018 21 1 -0.3633 -0.0931 1.0234 22 1 -0.3633 0.9328 -0.4312 23 1 -0.3633 -0.8399 -0.5923 24 1 0.0183 3.0398 1.5534 25 1 5.2668 -2.2600 -0.0020 26 1 4.1682 -4.4557 -0.0026 27 1 -0.9121 -4.5859 -0.0130 28 1 1.6104 -6.4240 1.0258 29 1 2.4836 -6.2516 -0.5157 30 1 0.7371 -6.5952 -0.5158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:18 Heat of formation + Delta-G solvation = 110.501745 kcal Electronic energy + Delta-G solvation = -15978.109677 eV Core-core repulsion = 13389.218800 eV Total energy + Delta-G solvation = -2588.890878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31106 -37.76899 -35.69633 -33.51023 -31.90714 -29.88724 -28.12306 -27.02008 -26.02035 -24.09047 -21.83530 -21.69402 -19.66169 -17.69746 -16.64264 -16.19335 -15.50841 -15.23395 -14.57357 -14.05424 -13.92543 -13.58986 -12.92887 -12.89759 -12.51676 -12.47410 -11.60403 -11.51648 -11.32967 -11.24773 -10.82175 -10.47174 -10.35767 -9.75363 -9.19422 -9.09408 -8.36073 -8.21434 -8.01279 -6.61882 -6.33040 -3.78197 2.04899 2.65622 3.18571 3.20701 3.21816 3.25256 3.60358 4.02128 4.70618 4.79074 4.95257 5.06657 5.25516 5.31050 5.33544 5.49650 5.94003 6.11233 6.21485 6.35233 6.67691 6.80887 7.00422 7.18811 7.27418 7.35782 7.46902 7.60083 7.84224 8.00814 8.50618 8.66035 9.07727 9.36899 9.75530 10.53534 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.044206 B = 0.007748 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.243215 B = 3612.823174 C = 4175.228974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.383 5.383 3 C -0.288 4.288 4 H 0.110 0.890 5 C 0.026 3.974 6 N -0.864 5.864 7 Si 0.937 3.063 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.404 3.596 12 N -0.572 5.572 13 C 0.186 3.814 14 C -0.332 4.332 15 C 0.137 3.863 16 C -0.083 4.083 17 N -0.453 5.453 18 C 0.169 3.831 19 N -0.498 5.498 20 C 0.089 3.911 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.273 0.727 25 H 0.139 0.861 26 H 0.103 0.897 27 H 0.198 0.802 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -10.791 -2.186 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.065 5.065 3 C -0.418 4.418 4 H 0.128 0.872 5 C -0.180 4.180 6 N -0.498 5.498 7 Si 0.762 3.238 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.194 1.194 11 C 0.155 3.845 12 N -0.296 5.296 13 C 0.024 3.976 14 C -0.364 4.364 15 C 0.021 3.979 16 C -0.209 4.209 17 N -0.172 5.172 18 C -0.114 4.114 19 N -0.190 5.190 20 C -0.054 4.054 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.157 0.843 26 H 0.121 0.879 27 H 0.214 0.786 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.273 -8.997 -2.060 9.234 hybrid contribution 0.427 -0.853 0.089 0.958 sum 0.154 -9.851 -1.971 10.047 Atomic orbital electron populations 1.21789 0.78178 1.00901 1.01753 1.42850 1.05510 1.02155 1.55940 1.19969 1.01263 0.83829 1.36699 0.87201 1.25579 0.96614 1.00808 0.95024 1.70118 1.18186 1.30468 1.31033 0.85822 0.79145 0.79914 0.78883 1.19600 1.20780 1.19370 1.17651 0.87491 0.83271 0.96093 1.67222 1.04664 1.29872 1.27852 1.21796 0.98266 0.86569 0.90952 1.19848 0.89550 0.98521 1.28502 1.18577 0.91910 0.87407 1.00031 1.19017 0.89416 0.93178 1.19294 1.70106 1.18400 1.10972 1.17676 1.24812 0.88485 0.89500 1.08568 1.44926 1.06319 1.05770 1.62033 1.21742 1.02770 0.78395 1.02461 0.92766 0.91200 0.91884 0.91683 0.84325 0.87857 0.78565 0.91707 0.90435 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.98 8.11 59.85 0.49 3.47 16 2 N -0.38 -10.49 3.10 -122.20 -0.38 -10.87 16 3 C -0.29 -7.97 9.24 -15.10 -0.14 -8.11 16 4 H 0.11 3.05 7.41 -52.48 -0.39 2.66 16 5 C 0.03 0.68 5.06 -17.46 -0.09 0.59 16 6 N -0.86 -23.36 10.81 55.49 0.60 -22.76 16 7 Si 0.94 20.37 29.57 -169.99 -5.03 15.34 16 8 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 C 0.40 10.64 7.37 -155.00 -1.14 9.50 16 12 N -0.57 -14.37 9.23 -12.23 -0.11 -14.48 16 13 C 0.19 3.87 11.15 -17.54 -0.20 3.68 16 14 C -0.33 -6.52 10.13 -39.37 -0.40 -6.92 16 15 C 0.14 2.88 6.92 -84.07 -0.58 2.29 16 16 C -0.08 -2.01 6.54 -84.54 -0.55 -2.56 16 17 N -0.45 -9.99 8.62 -11.85 -0.10 -10.09 16 18 C 0.17 2.93 12.51 -89.55 -1.12 1.81 16 19 N -0.50 -8.39 3.19 -123.13 -0.39 -8.78 16 20 C 0.09 0.97 11.19 59.84 0.67 1.64 16 21 H 0.05 1.45 7.86 -51.93 -0.41 1.04 16 22 H 0.07 1.80 6.75 -51.93 -0.35 1.45 16 23 H 0.06 1.53 5.70 -51.93 -0.30 1.23 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 25 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.20 2.40 8.06 -52.48 -0.42 1.97 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -32.18 258.69 -7.69 -39.88 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.11 Total: 2.48 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.06 Total: 5.39 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.39 Total: -66.99 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.18 -7.69 -39.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.378 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds