Wall clock time and date at job start Sun Mar 29 2020 21:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36876 * 119.99712 * 2 1 4 4 H 1.08004 * 119.99725 * 205.19317 * 3 2 1 5 5 C 1.38788 * 120.00064 * 25.19859 * 3 2 1 6 6 N 1.31578 * 120.00123 * 11.37470 * 5 3 2 7 7 Si 1.86801 * 120.00079 * 191.37401 * 5 3 2 8 8 H 1.48504 * 109.47171 * 59.99937 * 7 5 3 9 9 H 1.48500 * 109.47197 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47239 * 300.00233 * 7 5 3 11 11 C 1.38549 * 120.00322 * 180.02562 * 2 1 3 12 12 N 1.32365 * 119.96209 * 179.97438 * 11 2 1 13 13 C 1.32228 * 122.26912 * 180.02562 * 12 11 2 14 14 C 1.37812 * 121.37030 * 359.97438 * 13 12 11 15 15 C 1.39235 * 118.98879 * 0.03731 * 14 13 12 16 16 C 1.40422 * 119.95661 * 359.97438 * 11 2 1 17 17 N 1.35468 * 134.45396 * 0.02562 * 16 11 2 18 18 C 1.30194 * 109.59830 * 179.69839 * 17 16 11 19 19 N 1.36217 * 110.03445 * 0.46096 * 18 17 16 20 20 C 1.46491 * 126.34839 * 179.81282 * 19 18 17 21 21 H 1.08995 * 109.46910 * 264.80426 * 1 2 3 22 22 H 1.09000 * 109.46941 * 24.80830 * 1 2 3 23 23 H 1.09003 * 109.46820 * 144.80591 * 1 2 3 24 24 H 0.96995 * 120.00057 * 179.97438 * 6 5 3 25 25 H 1.08009 * 119.31696 * 180.02562 * 13 12 11 26 26 H 1.08000 * 120.50552 * 180.02562 * 14 13 12 27 27 H 1.08004 * 124.98191 * 180.28956 * 18 17 16 28 28 H 1.09007 * 109.47411 * 269.68379 * 20 19 18 29 29 H 1.09000 * 109.47102 * 149.68847 * 20 19 18 30 30 H 1.09002 * 109.47627 * 29.68837 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1523 1.2299 -0.3982 5 6 1.5544 2.3301 0.5117 6 7 0.4338 2.2398 1.1955 7 14 2.3445 3.9992 0.2298 8 1 2.4358 4.2637 -1.2286 9 1 1.5186 5.0527 0.8727 10 1 3.7068 4.0081 0.8207 11 6 2.1578 -1.1998 -0.0005 12 7 3.4815 -1.1989 -0.0010 13 6 4.1882 -2.3164 -0.0021 14 6 3.5772 -3.5517 -0.0021 15 6 2.1864 -3.6165 -0.0019 16 6 1.4548 -2.4154 -0.0005 17 7 0.1428 -2.7526 -0.0005 18 6 0.0252 -4.0492 -0.0070 19 7 1.2575 -4.6297 -0.0013 20 6 1.5402 -6.0670 -0.0018 21 1 -0.3633 -0.0931 1.0234 22 1 -0.3633 0.9328 -0.4312 23 1 -0.3633 -0.8399 -0.5923 24 1 0.0183 3.0398 1.5534 25 1 5.2668 -2.2600 -0.0020 26 1 4.1682 -4.4557 -0.0026 27 1 -0.9121 -4.5859 -0.0130 28 1 1.6104 -6.4240 1.0258 29 1 2.4836 -6.2516 -0.5157 30 1 0.7371 -6.5952 -0.5158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:17 Heat of formation + Delta-G solvation = 90.795464 kcal Electronic energy + Delta-G solvation = -15978.964206 eV Core-core repulsion = 13389.218800 eV Total energy + Delta-G solvation = -2589.745406 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.87638 -39.51211 -37.49560 -34.95085 -33.71039 -31.57930 -29.85902 -28.62616 -27.48128 -25.90209 -23.50884 -23.35269 -21.23644 -19.47513 -18.17547 -17.88252 -17.28240 -16.65095 -16.25498 -15.74042 -15.51143 -15.27776 -14.66204 -14.33667 -13.92979 -13.56732 -13.31429 -13.11265 -13.10109 -12.93834 -12.63689 -12.33093 -12.11517 -11.43919 -10.94924 -10.73765 -10.12380 -9.98252 -9.62689 -8.46281 -8.14914 -5.78832 0.42462 0.93952 1.40835 1.49518 1.53589 1.95250 2.09462 2.25713 2.89453 2.93010 3.45018 3.59280 3.94236 4.06023 4.37749 4.49954 4.54410 4.59171 4.78274 4.84641 4.87849 5.01516 5.11907 5.28166 5.43258 5.56116 5.66982 5.87376 6.17815 6.50665 6.60033 7.05969 7.24670 7.53043 7.93982 8.66659 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.044206 B = 0.007748 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.243215 B = 3612.823174 C = 4175.228974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.427 5.427 3 C -0.317 4.317 4 H 0.094 0.906 5 C -0.019 4.019 6 N -0.903 5.903 7 Si 1.004 2.996 8 H -0.265 1.265 9 H -0.275 1.275 10 H -0.268 1.268 11 C 0.391 3.609 12 N -0.605 5.605 13 C 0.159 3.841 14 C -0.296 4.296 15 C 0.119 3.881 16 C -0.116 4.116 17 N -0.507 5.507 18 C 0.211 3.789 19 N -0.491 5.491 20 C 0.079 3.921 21 H 0.025 0.975 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.273 0.727 25 H 0.177 0.823 26 H 0.147 0.853 27 H 0.254 0.746 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -14.379 -2.581 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.115 5.115 3 C -0.447 4.447 4 H 0.112 0.888 5 C -0.220 4.220 6 N -0.540 5.540 7 Si 0.826 3.174 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.193 1.193 11 C 0.144 3.856 12 N -0.330 5.330 13 C 0.002 3.998 14 C -0.327 4.327 15 C 0.000 4.000 16 C -0.241 4.241 17 N -0.226 5.226 18 C -0.074 4.074 19 N -0.182 5.182 20 C -0.062 4.062 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.194 0.806 26 H 0.165 0.835 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.373 -12.700 -2.465 12.942 hybrid contribution 0.305 -0.373 0.191 0.518 sum 0.678 -13.073 -2.274 13.287 Atomic orbital electron populations 1.21346 0.78295 1.00041 0.99720 1.42847 1.05499 1.02400 1.60752 1.19944 1.01225 0.85147 1.38335 0.88803 1.26405 0.97221 1.03847 0.94529 1.70222 1.19748 1.31075 1.32935 0.84840 0.78051 0.75618 0.78907 1.18956 1.19937 1.19305 1.18192 0.88402 0.84105 0.94868 1.67221 1.04760 1.32388 1.28680 1.22508 0.99955 0.86220 0.91119 1.20367 0.89490 0.99614 1.23260 1.18861 0.92822 0.87839 1.00439 1.19259 0.91083 0.93642 1.20078 1.70073 1.17786 1.13793 1.20979 1.25993 0.90441 0.88529 1.02461 1.45330 1.05069 1.07582 1.60213 1.22242 1.04965 0.74511 1.04434 0.95642 0.92822 0.91256 0.91753 0.80635 0.83485 0.73053 0.89924 0.89366 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.16 8.11 127.77 1.04 9.19 16 2 N -0.43 -24.85 3.10 -540.52 -1.68 -26.53 16 3 C -0.32 -18.73 9.24 84.04 0.78 -17.96 16 4 H 0.09 5.59 7.41 -2.91 -0.02 5.56 16 5 C -0.02 -1.05 5.06 84.86 0.43 -0.62 16 6 N -0.90 -51.91 10.81 21.64 0.23 -51.68 16 7 Si 1.00 43.80 29.57 68.60 2.03 45.83 16 8 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.39 21.33 7.37 133.54 0.98 22.31 16 12 N -0.60 -31.02 9.23 -192.59 -1.78 -32.80 16 13 C 0.16 6.38 11.15 84.53 0.94 7.32 16 14 C -0.30 -10.59 10.13 22.41 0.23 -10.36 16 15 C 0.12 4.64 6.92 39.09 0.27 4.91 16 16 C -0.12 -5.60 6.54 39.70 0.26 -5.34 16 17 N -0.51 -21.82 8.62 -191.42 -1.65 -23.47 16 18 C 0.21 6.42 12.51 179.97 2.25 8.67 16 19 N -0.49 -14.19 3.19 -543.46 -1.74 -15.92 16 20 C 0.08 1.19 11.19 127.77 1.43 2.62 16 21 H 0.02 1.46 7.86 -2.39 -0.02 1.44 16 22 H 0.05 2.98 6.75 -2.39 -0.02 2.96 16 23 H 0.07 3.55 5.70 -2.39 -0.01 3.54 16 24 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.18 5.48 8.06 -2.91 -0.02 5.46 16 26 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 27 H 0.25 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.45 258.69 5.18 -71.27 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.15 Total: 12.54 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 8.61 Total: 20.75 kcal Atomic # 7 Polarization: -143.79 SS G_CDS: -6.61 Total: -150.39 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.45 5.18 -71.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.068 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds