Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 119.99756 * 2 1 4 4 H 1.09008 * 109.47460 * 119.99783 * 3 2 1 5 5 O 1.42901 * 109.47276 * 359.97438 * 3 2 1 6 6 C 1.42895 * 113.99948 * 90.00364 * 5 3 2 7 7 C 1.53006 * 109.47036 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00192 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47309 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47510 * 119.99847 * 12 10 8 15 15 H 1.48506 * 109.47246 * 239.99882 * 12 10 8 16 16 C 1.50699 * 109.46995 * 239.99523 * 3 2 1 17 17 C 1.38235 * 119.99781 * 84.72983 * 16 3 2 18 18 C 1.38239 * 119.99724 * 179.81192 * 17 16 3 19 19 C 1.38237 * 120.00056 * 0.39388 * 18 17 16 20 20 C 1.38231 * 119.99990 * 359.85598 * 19 18 17 21 21 C 1.38233 * 120.00057 * 359.95813 * 20 19 18 22 22 H 1.07996 * 120.00500 * 0.02562 * 1 2 3 23 23 H 1.08010 * 119.99977 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00041 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47626 * 60.00343 * 6 5 3 26 26 H 1.09001 * 109.47255 * 300.00084 * 6 5 3 27 27 H 1.09001 * 109.47002 * 299.99477 * 7 6 5 28 28 H 1.08993 * 109.46955 * 59.99914 * 7 6 5 29 29 H 0.96996 * 120.00505 * 179.97438 * 11 10 8 30 30 H 1.07999 * 120.00131 * 359.97438 * 17 16 3 31 31 H 1.08003 * 119.99747 * 180.22831 * 18 17 16 32 32 H 1.08004 * 119.99862 * 179.83187 * 19 18 17 33 33 H 1.08001 * 120.00265 * 179.97438 * 20 19 18 34 34 H 1.08009 * 120.00270 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 2.6901 1.3629 0.8900 5 8 1.1348 2.3912 -0.0006 6 6 0.7566 2.8333 1.3046 7 6 -0.2350 3.9922 1.1831 8 6 -0.6333 4.4589 2.5595 9 1 -0.2208 3.9768 3.4336 10 6 -1.5252 5.5005 2.7031 11 7 -2.0279 6.0871 1.6388 12 14 -2.0194 6.0785 4.4092 13 1 -1.3190 5.2600 5.4314 14 1 -1.6453 7.5058 4.5761 15 1 -3.4874 5.9287 4.5767 16 6 2.9299 1.3849 -1.2304 17 6 2.3972 1.8386 -2.4226 18 6 3.1931 1.9155 -3.5503 19 6 4.5194 1.5309 -3.4878 20 6 5.0506 1.0723 -2.2969 21 6 4.2559 0.9990 -1.1683 22 1 -0.5401 0.9352 -0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.6419 3.1674 1.8458 26 1 0.2890 2.0107 1.8456 27 1 0.2323 4.8150 0.6420 28 1 -1.1201 3.6577 0.6422 29 1 -2.6556 6.8197 1.7397 30 1 1.3600 2.1356 -2.4723 31 1 2.7779 2.2735 -4.4808 32 1 5.1404 1.5884 -4.3696 33 1 6.0867 0.7714 -2.2481 34 1 4.6708 0.6403 -0.2379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -12.081919 kcal Electronic energy + Delta-G solvation = -15404.329181 eV Core-core repulsion = 12881.370269 eV Total energy + Delta-G solvation = -2522.958912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44972 -37.56590 -33.76284 -32.71791 -31.12035 -30.78381 -29.66286 -25.87814 -24.39421 -22.44253 -21.47560 -20.80117 -19.38969 -16.98416 -16.45576 -16.08455 -15.44042 -15.22938 -14.50839 -14.22900 -13.85099 -13.59436 -13.25036 -12.88020 -12.41490 -12.23357 -11.85731 -11.31443 -11.23733 -11.02476 -10.92933 -10.73493 -10.46618 -10.35443 -9.51259 -9.22634 -9.14762 -8.96108 -8.80999 -8.57673 -8.36555 -6.03880 -4.07419 1.41617 1.52090 2.53230 3.29707 3.36871 3.40753 3.86826 4.22846 4.49328 4.94401 5.03046 5.06981 5.22123 5.25265 5.32465 5.47267 5.59333 5.69885 5.74516 6.02917 6.15513 6.17922 6.27921 6.30700 6.52474 6.62068 6.74287 6.86533 6.87372 6.98952 7.10960 7.55293 7.77693 7.82610 8.09574 8.35207 8.99300 9.56518 11.07793 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.004985 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.199715 B = 5615.401945 C = 5858.232149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.189 4.189 3 C 0.153 3.847 4 H 0.071 0.929 5 O -0.376 6.376 6 C 0.067 3.933 7 C 0.026 3.974 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.891 5.891 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.071 4.071 17 C -0.087 4.087 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.116 4.116 22 H 0.115 0.885 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.261 0.739 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -11.390 -7.113 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C 0.095 3.905 4 H 0.089 0.911 5 O -0.295 6.295 6 C -0.009 4.009 7 C -0.011 4.011 8 C -0.561 4.561 9 H 0.075 0.925 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.071 4.071 17 C -0.105 4.105 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.134 4.134 22 H 0.133 0.867 23 H 0.111 0.889 24 H 0.126 0.874 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.711 -11.157 -7.326 17.114 hybrid contribution -0.211 0.218 1.149 1.189 sum 10.500 -10.939 -6.177 16.373 Atomic orbital electron populations 1.23990 0.96205 1.02551 0.97688 1.23291 0.96717 0.97677 1.03030 1.19696 0.89707 0.86312 0.94825 0.91090 1.87963 1.61727 1.49021 1.30832 1.22977 0.98152 0.97906 0.81861 1.19064 0.93165 0.91342 0.97504 1.21087 1.26143 1.16907 0.92008 0.92514 1.24985 0.96020 0.96335 0.96894 1.69986 1.30783 1.23738 1.28458 0.86485 0.78331 0.78593 0.84285 1.19694 1.20911 1.20909 1.19757 0.93529 0.98925 0.94902 1.21094 1.00696 0.96967 0.91707 1.21187 0.94158 1.00348 0.98553 1.21114 0.95569 0.99937 0.97778 1.21023 0.99482 1.00856 0.93035 1.20953 0.93110 1.00637 0.98666 0.86671 0.88873 0.87368 0.94642 0.94355 0.95767 0.95762 0.92904 0.85201 0.86156 0.86444 0.86294 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 13.50 29.01 0.39 -2.14 16 2 C -0.19 -2.75 9.48 -36.03 -0.34 -3.09 16 3 C 0.15 2.46 2.87 -29.04 -0.08 2.38 16 4 H 0.07 1.08 7.70 -51.92 -0.40 0.68 16 5 O -0.38 -7.50 7.84 -35.23 -0.28 -7.77 16 6 C 0.07 1.45 5.12 37.16 0.19 1.64 16 7 C 0.03 0.70 5.34 -27.88 -0.15 0.56 16 8 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 9 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 12 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C -0.07 -1.06 4.98 -104.62 -0.52 -1.58 16 17 C -0.09 -1.30 9.35 -39.58 -0.37 -1.67 16 18 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 19 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 20 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 21 C -0.12 -1.47 9.68 -39.58 -0.38 -1.85 16 22 H 0.12 2.04 6.35 -52.49 -0.33 1.71 16 23 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 24 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 25 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 26 H 0.04 0.80 7.53 -51.93 -0.39 0.41 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.13 2.07 7.64 -52.49 -0.40 1.67 16 31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -30.62 295.00 -7.85 -38.48 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.87 Total: -0.52 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.87 Total: -25.02 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.28 Total: -7.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.62 -7.85 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.395 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds