Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 119.99756 * 2 1 4 4 H 1.09008 * 109.47460 * 119.99783 * 3 2 1 5 5 O 1.42901 * 109.47276 * 359.97438 * 3 2 1 6 6 C 1.42895 * 113.99948 * 90.00364 * 5 3 2 7 7 C 1.53006 * 109.47036 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00192 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47309 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47510 * 119.99847 * 12 10 8 15 15 H 1.48506 * 109.47246 * 239.99882 * 12 10 8 16 16 C 1.50699 * 109.46995 * 239.99523 * 3 2 1 17 17 C 1.38235 * 119.99781 * 84.72983 * 16 3 2 18 18 C 1.38239 * 119.99724 * 179.81192 * 17 16 3 19 19 C 1.38237 * 120.00056 * 0.39388 * 18 17 16 20 20 C 1.38231 * 119.99990 * 359.85598 * 19 18 17 21 21 C 1.38233 * 120.00057 * 359.95813 * 20 19 18 22 22 H 1.07996 * 120.00500 * 0.02562 * 1 2 3 23 23 H 1.08010 * 119.99977 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00041 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47626 * 60.00343 * 6 5 3 26 26 H 1.09001 * 109.47255 * 300.00084 * 6 5 3 27 27 H 1.09001 * 109.47002 * 299.99477 * 7 6 5 28 28 H 1.08993 * 109.46955 * 59.99914 * 7 6 5 29 29 H 0.96996 * 120.00505 * 179.97438 * 11 10 8 30 30 H 1.07999 * 120.00131 * 359.97438 * 17 16 3 31 31 H 1.08003 * 119.99747 * 180.22831 * 18 17 16 32 32 H 1.08004 * 119.99862 * 179.83187 * 19 18 17 33 33 H 1.08001 * 120.00265 * 179.97438 * 20 19 18 34 34 H 1.08009 * 120.00270 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 2.6901 1.3629 0.8900 5 8 1.1348 2.3912 -0.0006 6 6 0.7566 2.8333 1.3046 7 6 -0.2350 3.9922 1.1831 8 6 -0.6333 4.4589 2.5595 9 1 -0.2208 3.9768 3.4336 10 6 -1.5252 5.5005 2.7031 11 7 -2.0279 6.0871 1.6388 12 14 -2.0194 6.0785 4.4092 13 1 -1.3190 5.2600 5.4314 14 1 -1.6453 7.5058 4.5761 15 1 -3.4874 5.9287 4.5767 16 6 2.9299 1.3849 -1.2304 17 6 2.3972 1.8386 -2.4226 18 6 3.1931 1.9155 -3.5503 19 6 4.5194 1.5309 -3.4878 20 6 5.0506 1.0723 -2.2969 21 6 4.2559 0.9990 -1.1683 22 1 -0.5401 0.9352 -0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.6419 3.1674 1.8458 26 1 0.2890 2.0107 1.8456 27 1 0.2323 4.8150 0.6420 28 1 -1.1201 3.6577 0.6422 29 1 -2.6556 6.8197 1.7397 30 1 1.3600 2.1356 -2.4723 31 1 2.7779 2.2735 -4.4808 32 1 5.1404 1.5884 -4.3696 33 1 6.0867 0.7714 -2.2481 34 1 4.6708 0.6403 -0.2379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -28.621102 kcal Electronic energy + Delta-G solvation = -15405.046374 eV Core-core repulsion = 12881.370269 eV Total energy + Delta-G solvation = -2523.676105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58355 -38.90944 -35.62062 -34.36467 -32.28972 -31.82208 -31.49621 -27.30095 -26.23715 -23.53594 -22.79641 -22.43381 -20.63700 -18.65578 -17.95723 -17.40348 -16.98754 -16.60928 -16.18321 -15.42622 -15.14748 -15.07013 -14.36421 -14.20699 -13.97850 -13.69778 -13.37797 -13.04846 -12.70833 -12.58125 -12.40311 -12.28271 -11.93864 -11.87687 -11.45403 -11.36155 -10.71498 -10.51525 -10.26787 -9.79284 -9.61657 -8.24799 -6.38077 0.41810 0.53234 1.35583 1.40435 1.41438 1.54999 2.36473 2.77552 2.98909 3.09263 3.83698 3.99343 4.06637 4.21911 4.26992 4.33195 4.40557 4.44881 4.53757 4.68857 4.75397 4.90990 5.00686 5.09006 5.18674 5.34047 5.55534 5.57061 5.63816 5.64527 5.64763 5.74128 5.85283 6.11645 6.13797 6.45802 6.77871 7.31978 8.88525 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.004985 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.199715 B = 5615.401945 C = 5858.232149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.180 4.180 3 C 0.144 3.856 4 H 0.083 0.917 5 O -0.394 6.394 6 C 0.086 3.914 7 C 0.031 3.969 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.974 3.026 13 H -0.258 1.258 14 H -0.277 1.277 15 H -0.276 1.276 16 C -0.092 4.092 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.119 4.119 22 H 0.080 0.920 23 H 0.119 0.881 24 H 0.140 0.860 25 H 0.043 0.957 26 H 0.046 0.954 27 H -0.009 1.009 28 H -0.006 1.006 29 H 0.266 0.734 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.927 -12.644 -6.319 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.198 4.198 3 C 0.086 3.914 4 H 0.100 0.900 5 O -0.314 6.314 6 C 0.011 3.989 7 C -0.006 4.006 8 C -0.583 4.583 9 H 0.085 0.915 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.798 3.202 13 H -0.182 1.182 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.092 4.092 17 C -0.134 4.134 18 C -0.150 4.150 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.137 4.137 22 H 0.098 0.902 23 H 0.137 0.863 24 H 0.158 0.842 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.009 0.991 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.742 -12.429 -6.539 18.963 hybrid contribution -0.765 0.588 0.772 1.236 sum 11.977 -11.841 -5.766 17.802 Atomic orbital electron populations 1.23963 0.96632 1.02182 0.99045 1.23461 0.96491 0.98077 1.01747 1.19997 0.89457 0.85674 0.96229 0.89969 1.87933 1.63093 1.50875 1.29528 1.22511 0.97124 0.96322 0.82982 1.18901 0.93074 0.92169 0.96452 1.21492 1.26594 1.17443 0.92749 0.91484 1.26033 0.95750 0.96290 1.01628 1.70130 1.31425 1.24351 1.31286 0.85266 0.78134 0.78196 0.78628 1.18200 1.20218 1.20179 1.19767 0.94620 1.00758 0.94084 1.21057 1.00089 0.98979 0.93249 1.21413 0.94934 1.00308 0.98329 1.21522 0.95011 0.98397 0.99144 1.21463 1.00857 0.99373 0.92267 1.21228 0.92025 1.00124 1.00291 0.90150 0.86269 0.84231 0.93892 0.93554 0.99060 0.98744 0.92545 0.87874 0.84717 0.83309 0.82927 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.53 13.50 67.78 0.92 -4.62 16 2 C -0.18 -5.08 9.48 25.65 0.24 -4.84 16 3 C 0.14 4.62 2.87 29.10 0.08 4.70 16 4 H 0.08 2.42 7.70 -2.38 -0.02 2.40 16 5 O -0.39 -16.44 7.84 -148.98 -1.17 -17.61 16 6 C 0.09 3.89 5.12 71.98 0.37 4.26 16 7 C 0.03 1.76 5.34 29.85 0.16 1.92 16 8 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 9 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 10 C 0.00 0.07 5.46 84.65 0.46 0.53 16 11 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 12 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 13 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 C -0.09 -2.72 4.98 -19.87 -0.10 -2.82 16 17 C -0.12 -3.57 9.35 22.27 0.21 -3.36 16 18 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 19 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 20 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 21 C -0.12 -2.74 9.68 22.27 0.22 -2.52 16 22 H 0.08 3.03 6.35 -2.91 -0.02 3.02 16 23 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 24 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 25 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 26 H 0.05 1.99 7.53 -2.39 -0.02 1.97 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.10 3.61 7.64 -2.91 -0.02 3.59 16 31 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.33 295.00 5.66 -62.67 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.05 Total: 11.76 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 3.46 Total: -45.57 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.28 Total: -57.66 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.17 Total: -17.61 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.33 5.66 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.048 kcal (2) G-P(sol) polarization free energy of solvation -68.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds