Wall clock time and date at job start Sun Mar 29 2020 21:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50701 * 119.99886 * 2 1 4 4 C 1.31001 * 119.99938 * 180.02562 * 2 1 3 5 5 C 1.50700 * 119.99827 * 354.75672 * 4 2 1 6 6 C 1.50699 * 109.47238 * 122.29764 * 5 4 2 7 7 C 1.38300 * 119.93571 * 89.99533 * 6 5 4 8 8 C 1.38097 * 120.07226 * 179.97438 * 7 6 5 9 9 C 1.38880 * 119.92645 * 0.02565 * 8 7 6 10 10 O 1.35750 * 120.06432 * 179.97438 * 9 8 7 11 11 C 1.34829 * 117.00184 * 6.02740 * 10 9 8 12 12 H 1.07995 * 119.99958 * 354.83834 * 11 10 9 13 13 C 1.38655 * 120.00049 * 174.84129 * 11 10 9 14 14 N 1.31555 * 120.00060 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00151 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46900 * 89.99955 * 15 13 11 17 17 H 1.48495 * 109.47128 * 210.00200 * 15 13 11 18 18 H 1.48494 * 109.46853 * 330.00014 * 15 13 11 19 19 C 1.38880 * 119.86464 * 0.27696 * 9 8 7 20 20 C 1.38093 * 119.92791 * 359.44028 * 19 9 8 21 21 H 1.09000 * 109.46665 * 264.50166 * 1 2 3 22 22 H 1.09002 * 109.46712 * 24.50187 * 1 2 3 23 23 H 1.08994 * 109.46888 * 144.49911 * 1 2 3 24 24 H 1.08997 * 109.47046 * 269.99589 * 3 2 1 25 25 H 1.08998 * 109.47358 * 30.00198 * 3 2 1 26 26 H 1.09002 * 109.47030 * 150.00356 * 3 2 1 27 27 H 1.08000 * 120.00094 * 174.75334 * 4 2 1 28 28 H 1.08999 * 109.47274 * 2.29352 * 5 4 2 29 29 H 1.09003 * 109.46827 * 242.29369 * 5 4 2 30 30 H 1.08000 * 119.95861 * 0.02562 * 7 6 5 31 31 H 1.07994 * 120.03663 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00374 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.03040 * 179.72570 * 19 9 8 34 34 H 1.08001 * 119.96593 * 180.27458 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4132 -2.4369 0.1182 6 6 1.7246 -3.3058 -1.0731 7 6 2.7934 -4.1823 -1.0275 8 6 3.0810 -4.9802 -2.1173 9 6 2.2958 -4.9013 -3.2602 10 8 2.5763 -5.6840 -4.3333 11 6 3.5504 -6.6039 -4.1821 12 1 4.1244 -6.6373 -3.2680 13 6 3.8151 -7.5070 -5.2004 14 7 4.7659 -8.4043 -5.0531 15 14 2.8218 -7.4497 -6.7814 16 1 3.4862 -6.5419 -7.7508 17 1 2.7343 -8.8142 -7.3607 18 1 1.4552 -6.9475 -6.4893 19 6 1.2270 -4.0157 -3.3052 20 6 0.9411 -3.2247 -2.2099 21 1 -0.3633 -0.0985 1.0230 22 1 -0.3633 0.9352 -0.4262 23 1 -0.3633 -0.8366 -0.5968 24 1 2.4422 1.6197 -1.0276 25 1 1.6715 2.0648 0.5138 26 1 3.2130 1.1748 0.5138 27 1 3.2386 -1.1365 -0.0860 28 1 0.3420 -2.2383 0.1530 29 1 1.7176 -2.9491 1.0309 30 1 3.4033 -4.2433 -0.1383 31 1 3.9160 -5.6641 -2.0812 32 1 4.9508 -9.0363 -5.7652 33 1 0.6174 -3.9490 -4.1941 34 1 0.1074 -2.5389 -2.2427 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249951120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:36 Heat of formation + Delta-G solvation = -2.696916 kcal Electronic energy + Delta-G solvation = -15260.186281 eV Core-core repulsion = 12737.634333 eV Total energy + Delta-G solvation = -2522.551948 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23452 -37.46690 -36.00791 -32.46047 -31.41912 -30.22190 -27.96663 -27.54675 -25.35402 -23.67971 -22.05508 -20.38355 -17.87485 -17.74976 -17.24125 -15.23488 -14.88060 -14.61205 -14.32403 -13.97444 -13.86622 -13.71090 -13.42344 -12.65252 -12.51247 -12.41588 -12.18104 -12.08531 -11.75768 -11.66309 -11.24490 -10.93603 -10.81810 -10.61892 -10.44903 -10.14103 -9.36624 -8.85267 -8.57354 -8.24303 -7.25866 -6.40464 -4.07086 2.13195 2.14946 2.39159 3.23354 3.25883 3.40862 4.24631 4.47698 4.86880 4.91467 4.99103 5.12245 5.33088 5.41542 5.46567 5.48702 5.60602 5.68142 5.77098 5.78000 5.87213 5.91709 6.00885 6.14235 6.17682 6.37579 6.57019 6.76616 6.83479 6.97279 7.09854 7.27929 7.34589 7.63682 7.81617 8.05450 8.94973 9.58025 10.67331 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.050179 B = 0.004878 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.864414 B = 5739.112357 C = 5942.430614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.153 4.153 3 C -0.113 4.113 4 C -0.141 4.141 5 C -0.043 4.043 6 C -0.167 4.167 7 C -0.071 4.071 8 C -0.219 4.219 9 C 0.156 3.844 10 O -0.219 6.219 11 C -0.389 4.389 12 H 0.106 0.894 13 C 0.063 3.937 14 N -0.881 5.881 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.260 1.260 19 C -0.191 4.191 20 C -0.072 4.072 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.279 0.721 33 H 0.116 0.884 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 13.603 8.609 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.153 4.153 3 C -0.170 4.170 4 C -0.159 4.159 5 C -0.080 4.080 6 C -0.168 4.168 7 C -0.090 4.090 8 C -0.238 4.238 9 C 0.105 3.895 10 O -0.124 6.124 11 C -0.465 4.465 12 H 0.123 0.877 13 C -0.140 4.140 14 N -0.519 5.519 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.210 4.210 20 C -0.091 4.091 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.747 13.398 8.274 17.131 hybrid contribution -0.042 -0.186 -0.700 0.726 sum -6.790 13.212 7.573 16.674 Atomic orbital electron populations 1.20853 0.92694 1.02154 1.01683 1.21507 0.95662 0.94890 1.03204 1.20773 0.99420 0.95044 1.01743 1.22703 0.99549 0.93531 1.00159 1.19596 0.99633 0.92647 0.96111 1.19262 0.99604 1.01661 0.96233 1.20675 0.96014 0.94916 0.97348 1.21273 1.03574 1.04621 0.94331 1.19130 0.92731 0.90875 0.86809 1.83568 1.52463 1.43782 1.32636 1.20770 1.10833 1.09255 1.05650 0.87674 1.24462 0.96435 0.94131 0.98968 1.69644 1.29963 1.17869 1.34429 0.86179 0.81444 0.77380 0.81898 1.19898 1.20815 1.18369 1.20197 0.99550 1.01259 0.99997 1.20475 0.98469 0.97747 0.92370 0.91977 0.92428 0.91321 0.91902 0.92278 0.92199 0.87569 0.90904 0.91007 0.87329 0.85008 0.91080 0.86631 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.02 36.01 0.32 -0.83 16 2 C -0.15 -1.72 6.05 -101.06 -0.61 -2.34 16 3 C -0.11 -1.08 10.00 36.01 0.36 -0.72 16 4 C -0.14 -1.80 9.08 -36.03 -0.33 -2.12 16 5 C -0.04 -0.57 5.51 -29.04 -0.16 -0.73 16 6 C -0.17 -2.79 5.12 -104.58 -0.54 -3.33 16 7 C -0.07 -1.31 9.69 -39.61 -0.38 -1.69 16 8 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 9 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 10 O -0.22 -5.88 8.59 0.05 0.00 -5.88 16 11 C -0.39 -11.11 9.95 30.89 0.31 -10.80 16 12 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 13 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 14 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 15 Si 0.91 21.87 28.62 -169.99 -4.86 17.00 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.19 -3.86 9.99 -39.40 -0.39 -4.25 16 20 C -0.07 -1.25 9.69 -39.61 -0.38 -1.64 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 23 H 0.07 0.70 6.51 -51.93 -0.34 0.37 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 27 H 0.11 1.38 8.05 -52.49 -0.42 0.95 16 28 H 0.07 0.87 5.47 -51.93 -0.28 0.59 16 29 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.13 3.03 5.65 -52.49 -0.30 2.73 16 32 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -29.37 290.13 -6.79 -36.16 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.56 Total: 1.71 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: -2.52 Total: -28.50 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.77 Total: -24.87 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: 0.00 Total: -5.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.37 -6.79 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249951120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.463 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds