Wall clock time and date at job start Sun Mar 29 2020 21:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50701 * 119.99886 * 2 1 4 4 C 1.31001 * 119.99938 * 180.02562 * 2 1 3 5 5 C 1.50700 * 119.99827 * 354.75672 * 4 2 1 6 6 C 1.50699 * 109.47238 * 122.29764 * 5 4 2 7 7 C 1.38300 * 119.93571 * 89.99533 * 6 5 4 8 8 C 1.38097 * 120.07226 * 179.97438 * 7 6 5 9 9 C 1.38880 * 119.92645 * 0.02565 * 8 7 6 10 10 O 1.35750 * 120.06432 * 179.97438 * 9 8 7 11 11 C 1.34829 * 117.00184 * 6.02740 * 10 9 8 12 12 H 1.07995 * 119.99958 * 354.83834 * 11 10 9 13 13 C 1.38655 * 120.00049 * 174.84129 * 11 10 9 14 14 N 1.31555 * 120.00060 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00151 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46900 * 89.99955 * 15 13 11 17 17 H 1.48495 * 109.47128 * 210.00200 * 15 13 11 18 18 H 1.48494 * 109.46853 * 330.00014 * 15 13 11 19 19 C 1.38880 * 119.86464 * 0.27696 * 9 8 7 20 20 C 1.38093 * 119.92791 * 359.44028 * 19 9 8 21 21 H 1.09000 * 109.46665 * 264.50166 * 1 2 3 22 22 H 1.09002 * 109.46712 * 24.50187 * 1 2 3 23 23 H 1.08994 * 109.46888 * 144.49911 * 1 2 3 24 24 H 1.08997 * 109.47046 * 269.99589 * 3 2 1 25 25 H 1.08998 * 109.47358 * 30.00198 * 3 2 1 26 26 H 1.09002 * 109.47030 * 150.00356 * 3 2 1 27 27 H 1.08000 * 120.00094 * 174.75334 * 4 2 1 28 28 H 1.08999 * 109.47274 * 2.29352 * 5 4 2 29 29 H 1.09003 * 109.46827 * 242.29369 * 5 4 2 30 30 H 1.08000 * 119.95861 * 0.02562 * 7 6 5 31 31 H 1.07994 * 120.03663 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00374 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.03040 * 179.72570 * 19 9 8 34 34 H 1.08001 * 119.96593 * 180.27458 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4132 -2.4369 0.1182 6 6 1.7246 -3.3058 -1.0731 7 6 2.7934 -4.1823 -1.0275 8 6 3.0810 -4.9802 -2.1173 9 6 2.2958 -4.9013 -3.2602 10 8 2.5763 -5.6840 -4.3333 11 6 3.5504 -6.6039 -4.1821 12 1 4.1244 -6.6373 -3.2680 13 6 3.8151 -7.5070 -5.2004 14 7 4.7659 -8.4043 -5.0531 15 14 2.8218 -7.4497 -6.7814 16 1 3.4862 -6.5419 -7.7508 17 1 2.7343 -8.8142 -7.3607 18 1 1.4552 -6.9475 -6.4893 19 6 1.2270 -4.0157 -3.3052 20 6 0.9411 -3.2247 -2.2099 21 1 -0.3633 -0.0985 1.0230 22 1 -0.3633 0.9352 -0.4262 23 1 -0.3633 -0.8366 -0.5968 24 1 2.4422 1.6197 -1.0276 25 1 1.6715 2.0648 0.5138 26 1 3.2130 1.1748 0.5138 27 1 3.2386 -1.1365 -0.0860 28 1 0.3420 -2.2383 0.1530 29 1 1.7176 -2.9491 1.0309 30 1 3.4033 -4.2433 -0.1383 31 1 3.9160 -5.6641 -2.0812 32 1 4.9508 -9.0363 -5.7652 33 1 0.6174 -3.9490 -4.1941 34 1 0.1074 -2.5389 -2.2427 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249951120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:35 Heat of formation + Delta-G solvation = -18.105953 kcal Electronic energy + Delta-G solvation = -15260.854467 eV Core-core repulsion = 12737.634333 eV Total energy + Delta-G solvation = -2523.220134 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91614 -38.91296 -37.21379 -34.49611 -32.75012 -31.80203 -29.09717 -28.50925 -27.18491 -24.92354 -23.67959 -21.92964 -19.81238 -19.10172 -18.64082 -16.75112 -16.36711 -16.05832 -15.70199 -15.36435 -15.29582 -15.14348 -14.59533 -14.35101 -14.13455 -14.00976 -13.21614 -13.18033 -12.83348 -12.82474 -12.58162 -12.48695 -12.33672 -11.98789 -11.92645 -11.59988 -11.24667 -10.89098 -9.81240 -9.50704 -8.93037 -8.50652 -6.23323 0.55989 0.63920 1.30615 1.34601 1.39150 1.51177 2.27623 2.76036 3.03908 3.18058 3.97942 4.08894 4.14640 4.20250 4.23866 4.50074 4.54331 4.61821 4.74531 4.76679 4.87148 4.93639 5.02218 5.05682 5.11172 5.21724 5.24494 5.30256 5.39460 5.58807 5.75692 5.79659 5.87759 5.93530 6.12752 6.27268 6.83649 7.58583 8.61154 Molecular weight = 232.12amu Principal moments of inertia in cm(-1) A = 0.050179 B = 0.004878 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.864414 B = 5739.112357 C = 5942.430614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C -0.118 4.118 4 C -0.170 4.170 5 C -0.038 4.038 6 C -0.141 4.141 7 C -0.076 4.076 8 C -0.236 4.236 9 C 0.113 3.887 10 O -0.246 6.246 11 C -0.401 4.401 12 H 0.079 0.921 13 C 0.010 3.990 14 N -0.924 5.924 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.266 1.266 18 H -0.263 1.263 19 C -0.190 4.190 20 C -0.067 4.067 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.285 0.715 33 H 0.128 0.872 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 16.244 9.501 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 C -0.174 4.174 4 C -0.188 4.188 5 C -0.075 4.075 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.255 4.255 9 C 0.064 3.936 10 O -0.154 6.154 11 C -0.477 4.477 12 H 0.097 0.903 13 C -0.189 4.189 14 N -0.565 5.565 15 Si 0.794 3.206 16 H -0.190 1.190 17 H -0.191 1.191 18 H -0.187 1.187 19 C -0.209 4.209 20 C -0.085 4.085 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.106 16.071 9.202 20.636 hybrid contribution 0.596 -0.715 -0.677 1.151 sum -8.510 15.356 8.525 19.517 Atomic orbital electron populations 1.20944 0.91353 1.02877 1.02683 1.21854 0.96783 0.95003 1.00189 1.20852 0.99707 0.94745 1.02131 1.22578 0.99235 0.93692 1.03322 1.19647 1.01076 0.92216 0.94539 1.19807 0.97323 0.99764 0.97266 1.20977 0.96986 0.94416 0.96986 1.21285 1.03199 1.05405 0.95589 1.19684 0.94784 0.92098 0.87026 1.83507 1.52793 1.44821 1.34312 1.20714 1.11486 1.10361 1.05164 0.90333 1.25292 0.97587 0.93725 1.02247 1.69729 1.31801 1.19114 1.35886 0.85200 0.79479 0.78135 0.77791 1.19043 1.19104 1.18711 1.20530 0.98384 1.00426 1.01560 1.20951 0.99227 0.97144 0.91157 0.90599 0.91166 0.91374 0.91724 0.90578 0.92079 0.88503 0.88808 0.89916 0.84876 0.87582 0.90555 0.85404 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.02 71.24 0.64 -1.18 16 2 C -0.14 -2.59 6.05 -16.49 -0.10 -2.69 16 3 C -0.12 -1.86 10.00 71.24 0.71 -1.15 16 4 C -0.17 -3.77 9.08 25.65 0.23 -3.53 16 5 C -0.04 -0.86 5.51 29.10 0.16 -0.70 16 6 C -0.14 -4.31 5.12 -19.83 -0.10 -4.41 16 7 C -0.08 -2.71 9.69 22.25 0.22 -2.49 16 8 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 9 C 0.11 5.44 6.65 22.58 0.15 5.59 16 10 O -0.25 -13.76 8.59 -22.74 -0.20 -13.96 16 11 C -0.40 -24.22 9.95 67.92 0.68 -23.54 16 12 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 13 C 0.01 0.57 5.49 84.83 0.47 1.04 16 14 N -0.92 -56.08 13.96 21.61 0.30 -55.77 16 15 Si 0.97 46.14 28.62 68.60 1.96 48.10 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 19 C -0.19 -7.45 9.99 22.39 0.22 -7.23 16 20 C -0.07 -2.10 9.69 22.25 0.22 -1.89 16 21 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 23 H 0.07 1.04 6.51 -2.39 -0.02 1.02 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 26 H 0.06 0.95 8.07 -2.39 -0.02 0.93 16 27 H 0.10 2.31 8.05 -2.91 -0.02 2.29 16 28 H 0.09 1.77 5.47 -2.39 -0.01 1.76 16 29 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 30 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.11 5.31 5.65 -2.91 -0.02 5.29 16 32 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -66.47 290.13 6.85 -59.62 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.08 Total: 14.70 kcal Atomic # 6 Polarization: -56.40 SS G_CDS: 3.70 Total: -52.70 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.30 Total: -55.77 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.20 Total: -13.96 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.96 Total: 48.10 kcal Total: -66.47 6.85 -59.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249951120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.515 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds