Wall clock time and date at job start Sun Mar 29 2020 22:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 H 1.09002 * 109.46750 * 179.01758 * 3 2 1 5 5 C 1.50693 * 109.46986 * 59.02069 * 3 2 1 6 6 H 1.08003 * 120.00513 * 239.99777 * 5 3 2 7 7 C 1.37884 * 120.00141 * 59.99541 * 5 3 2 8 8 N 1.31513 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99907 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46930 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47422 * 300.00281 * 9 7 5 12 12 H 1.48505 * 109.46795 * 60.00529 * 9 7 5 13 13 N 1.46897 * 109.47372 * 299.01660 * 3 2 1 14 14 C 1.48073 * 110.99861 * 181.04670 * 13 3 2 15 15 C 1.51034 * 105.62708 * 146.91492 * 14 13 3 16 16 C 1.38417 * 132.08579 * 162.55732 * 15 14 13 17 17 C 1.38687 * 118.38299 * 180.09554 * 16 15 14 18 18 C 1.38229 * 119.05471 * 359.92228 * 17 16 15 19 19 N 1.31818 * 120.87731 * 0.03106 * 18 17 16 20 20 C 1.31972 * 121.82295 * 359.97438 * 19 18 17 21 21 C 1.48032 * 111.00241 * 296.04607 * 13 3 2 22 22 H 1.09005 * 109.47144 * 183.66813 * 1 2 3 23 23 H 1.09003 * 109.47012 * 303.66429 * 1 2 3 24 24 H 1.09002 * 109.46934 * 63.66663 * 1 2 3 25 25 H 1.09004 * 109.46861 * 240.00312 * 2 1 3 26 26 H 1.08996 * 109.46903 * 120.00487 * 2 1 3 27 27 H 0.97004 * 119.99780 * 179.97438 * 8 7 5 28 28 H 1.09005 * 110.21544 * 265.94780 * 14 13 3 29 29 H 1.08996 * 110.21752 * 27.78834 * 14 13 3 30 30 H 1.08006 * 120.81205 * 0.03526 * 16 15 14 31 31 H 1.08002 * 120.47548 * 179.97438 * 17 16 15 32 32 H 1.08006 * 119.56630 * 180.02562 * 18 17 16 33 33 H 1.09001 * 110.20095 * 332.08779 * 21 13 3 34 34 H 1.08998 * 110.20329 * 93.96297 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0176 5 6 1.5179 2.1598 1.2181 6 1 0.8987 3.0373 1.1041 7 6 1.8307 1.6958 2.4783 8 7 2.5851 0.6276 2.6172 9 14 1.1841 2.5855 3.9882 10 1 1.6598 1.8926 5.2125 11 1 1.6796 3.9853 3.9881 12 1 -0.3008 2.5859 3.9644 13 7 1.5699 2.1281 -1.2111 14 6 2.0659 3.5225 -1.2579 15 6 2.2755 3.8309 -2.7215 16 6 2.4173 5.0250 -3.4069 17 6 2.5981 4.9789 -4.7812 18 6 2.6315 3.7499 -5.4130 19 7 2.4937 2.6327 -4.7271 20 6 2.3199 2.6362 -3.4189 21 6 2.1405 1.5072 -2.4277 22 1 -0.3634 -1.0256 0.0657 23 1 -0.3633 0.5697 0.8553 24 1 -0.3633 0.4559 -0.9210 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.8054 0.3014 3.5038 28 1 1.3256 4.2001 -0.8324 29 1 3.0076 3.6057 -0.7155 30 1 2.3870 5.9698 -2.8844 31 1 2.7119 5.8902 -5.3495 32 1 2.7722 3.7044 -6.4829 33 1 3.1035 1.0497 -2.2005 34 1 1.4536 0.7611 -2.8271 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:34 Heat of formation + Delta-G solvation = 46.839747 kcal Electronic energy + Delta-G solvation = -16219.704327 eV Core-core repulsion = 13731.593202 eV Total energy + Delta-G solvation = -2488.111126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49143 -37.41126 -33.99951 -32.44787 -31.41787 -29.67475 -27.70686 -26.32910 -24.26722 -22.81265 -21.71862 -21.04485 -19.09974 -16.54878 -16.24109 -16.06130 -15.10102 -14.86277 -14.45079 -13.66403 -13.41342 -13.14543 -12.70335 -12.50938 -12.34692 -12.15868 -11.80741 -11.47286 -11.24230 -10.93666 -10.78457 -10.43735 -10.13075 -9.77318 -9.55225 -9.46721 -9.07838 -8.94962 -8.68496 -8.40803 -7.41028 -6.06188 -4.10479 1.29496 1.47726 3.29050 3.34195 3.36621 3.97100 4.17909 4.38661 4.74548 4.95393 4.99740 5.25961 5.31377 5.33364 5.60863 5.81685 6.03492 6.15695 6.18264 6.28416 6.36507 6.45038 6.57865 6.59404 6.75102 6.89602 7.04766 7.13779 7.28687 7.51144 7.67724 7.77752 7.94290 8.19693 8.23180 8.42087 8.93334 9.53650 11.00457 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.007157 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.655101 B = 3911.194010 C = 4401.346939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C 0.207 3.793 4 H 0.004 0.996 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.276 1.276 13 N -0.491 5.491 14 C 0.091 3.909 15 C -0.146 4.146 16 C -0.065 4.065 17 C -0.180 4.180 18 C 0.091 3.909 19 N -0.480 5.480 20 C 0.121 3.879 21 C 0.086 3.914 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.015 0.985 26 H 0.093 0.907 27 H 0.262 0.738 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.063 0.937 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 5.881 -9.976 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C 0.101 3.899 4 H 0.022 0.978 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.216 5.216 14 C -0.038 4.038 15 C -0.149 4.149 16 C -0.091 4.091 17 C -0.200 4.200 18 C -0.066 4.066 19 N -0.189 5.189 20 C -0.018 4.018 21 C -0.043 4.043 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.249 4.911 -10.228 11.349 hybrid contribution 0.594 1.348 1.224 1.916 sum 0.345 6.260 -9.003 10.971 Atomic orbital electron populations 1.21480 0.97103 0.97754 1.01603 1.21531 0.95457 0.97611 1.00242 1.19613 0.93315 0.91515 0.85463 0.97797 1.20941 1.31542 1.12102 0.89441 0.91990 1.24888 0.95094 0.95046 0.98894 1.69865 1.36976 1.22930 1.23165 0.86601 0.79390 0.79650 0.82039 1.21355 1.20368 1.20147 1.65513 1.53276 1.00492 1.02287 1.21411 1.00168 0.93404 0.88766 1.21904 0.99442 0.94498 0.99045 1.20930 0.96787 0.97617 0.93813 1.21989 1.03502 0.99438 0.95082 1.22567 0.96863 0.87420 0.99730 1.66766 1.12368 1.31791 1.07974 1.22142 0.93822 0.96052 0.89772 1.21606 0.99587 0.93933 0.89188 0.96411 0.92078 0.94086 0.96671 0.88866 0.92818 0.89456 0.91644 0.85095 0.84959 0.82998 0.91944 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.11 -2.57 5.33 -26.73 -0.14 -2.72 16 3 C 0.21 4.98 1.34 -68.87 -0.09 4.89 16 4 H 0.00 0.12 7.91 -51.93 -0.41 -0.29 16 5 C -0.50 -13.00 6.73 -34.44 -0.23 -13.23 16 6 H 0.06 1.61 7.31 -52.48 -0.38 1.22 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -24.45 11.33 55.43 0.63 -23.82 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.49 -10.39 4.64 -228.34 -1.06 -11.45 16 14 C 0.09 1.75 5.65 -4.17 -0.02 1.72 16 15 C -0.15 -2.53 6.28 -104.33 -0.66 -3.18 16 16 C -0.07 -0.92 10.17 -39.35 -0.40 -1.32 16 17 C -0.18 -2.21 10.12 -39.42 -0.40 -2.61 16 18 C 0.09 1.23 11.18 -17.56 -0.20 1.04 16 19 N -0.48 -8.22 10.36 -9.22 -0.10 -8.32 16 20 C 0.12 2.21 7.44 -82.17 -0.61 1.60 16 21 C 0.09 1.65 5.40 -4.05 -0.02 1.63 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 1.45 7.06 -51.93 -0.37 1.08 16 24 H 0.04 0.86 7.75 -51.93 -0.40 0.46 16 25 H 0.01 0.32 7.28 -51.93 -0.38 -0.06 16 26 H 0.09 2.42 6.10 -51.93 -0.32 2.10 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 1.65 7.92 -51.93 -0.41 1.24 16 29 H 0.07 1.32 7.76 -51.93 -0.40 0.92 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.06 1.22 7.71 -51.93 -0.40 0.82 16 34 H 0.09 1.70 8.13 -51.93 -0.42 1.28 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -1.00 -28.06 277.20 -8.61 -36.67 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.72 Total: 0.04 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.52 Total: -12.94 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.53 Total: -43.59 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.06 -8.61 -36.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.506 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds