Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 H 1.09002 * 109.46750 * 179.01758 * 3 2 1 5 5 C 1.50693 * 109.46986 * 59.02069 * 3 2 1 6 6 H 1.08003 * 120.00513 * 239.99777 * 5 3 2 7 7 C 1.37884 * 120.00141 * 59.99541 * 5 3 2 8 8 N 1.31513 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99907 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46930 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47422 * 300.00281 * 9 7 5 12 12 H 1.48505 * 109.46795 * 60.00529 * 9 7 5 13 13 N 1.46897 * 109.47372 * 299.01660 * 3 2 1 14 14 C 1.48073 * 110.99861 * 181.04670 * 13 3 2 15 15 C 1.51034 * 105.62708 * 146.91492 * 14 13 3 16 16 C 1.38417 * 132.08579 * 162.55732 * 15 14 13 17 17 C 1.38687 * 118.38299 * 180.09554 * 16 15 14 18 18 C 1.38229 * 119.05471 * 359.92228 * 17 16 15 19 19 N 1.31818 * 120.87731 * 0.03106 * 18 17 16 20 20 C 1.31972 * 121.82295 * 359.97438 * 19 18 17 21 21 C 1.48032 * 111.00241 * 296.04607 * 13 3 2 22 22 H 1.09005 * 109.47144 * 183.66813 * 1 2 3 23 23 H 1.09003 * 109.47012 * 303.66429 * 1 2 3 24 24 H 1.09002 * 109.46934 * 63.66663 * 1 2 3 25 25 H 1.09004 * 109.46861 * 240.00312 * 2 1 3 26 26 H 1.08996 * 109.46903 * 120.00487 * 2 1 3 27 27 H 0.97004 * 119.99780 * 179.97438 * 8 7 5 28 28 H 1.09005 * 110.21544 * 265.94780 * 14 13 3 29 29 H 1.08996 * 110.21752 * 27.78834 * 14 13 3 30 30 H 1.08006 * 120.81205 * 0.03526 * 16 15 14 31 31 H 1.08002 * 120.47548 * 179.97438 * 17 16 15 32 32 H 1.08006 * 119.56630 * 180.02562 * 18 17 16 33 33 H 1.09001 * 110.20095 * 332.08779 * 21 13 3 34 34 H 1.08998 * 110.20329 * 93.96297 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0176 5 6 1.5179 2.1598 1.2181 6 1 0.8987 3.0373 1.1041 7 6 1.8307 1.6958 2.4783 8 7 2.5851 0.6276 2.6172 9 14 1.1841 2.5855 3.9882 10 1 1.6598 1.8926 5.2125 11 1 1.6796 3.9853 3.9881 12 1 -0.3008 2.5859 3.9644 13 7 1.5699 2.1281 -1.2111 14 6 2.0659 3.5225 -1.2579 15 6 2.2755 3.8309 -2.7215 16 6 2.4173 5.0250 -3.4069 17 6 2.5981 4.9789 -4.7812 18 6 2.6315 3.7499 -5.4130 19 7 2.4937 2.6327 -4.7271 20 6 2.3199 2.6362 -3.4189 21 6 2.1405 1.5072 -2.4277 22 1 -0.3634 -1.0256 0.0657 23 1 -0.3633 0.5697 0.8553 24 1 -0.3633 0.4559 -0.9210 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.8054 0.3014 3.5038 28 1 1.3256 4.2001 -0.8324 29 1 3.0076 3.6057 -0.7155 30 1 2.3870 5.9698 -2.8844 31 1 2.7119 5.8902 -5.3495 32 1 2.7722 3.7044 -6.4829 33 1 3.1035 1.0497 -2.2005 34 1 1.4536 0.7611 -2.8271 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = 29.395640 kcal Electronic energy + Delta-G solvation = -16220.460761 eV Core-core repulsion = 13731.593202 eV Total energy + Delta-G solvation = -2488.867559 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78152 -38.96043 -35.75786 -33.69854 -33.24045 -31.18096 -29.23890 -28.05814 -25.96609 -24.41624 -22.97828 -22.47383 -20.94492 -18.31338 -17.72143 -17.25400 -16.69885 -16.40604 -15.99520 -15.38256 -15.03304 -14.55873 -14.13781 -14.04763 -13.86691 -13.65930 -13.48621 -13.05895 -12.78358 -12.63085 -12.56147 -12.37529 -12.00934 -11.62708 -11.34835 -10.86376 -10.71455 -10.51824 -10.27669 -9.94514 -9.08207 -8.09390 -6.19809 0.12480 0.33712 1.44371 1.45752 1.52830 2.42718 2.80037 2.93910 3.17650 3.32880 3.55654 3.98690 4.10713 4.20323 4.43115 4.50353 4.57981 4.65216 4.70996 4.74410 4.78504 4.85812 4.90945 5.20075 5.24354 5.29757 5.34184 5.40535 5.64660 5.73123 5.78279 5.82360 6.12262 6.29191 6.50640 6.89248 7.02051 7.47643 8.96570 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.007157 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.655101 B = 3911.194010 C = 4401.346939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C 0.215 3.785 4 H -0.033 1.033 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.287 1.287 11 H -0.272 1.272 12 H -0.272 1.272 13 N -0.497 5.497 14 C 0.094 3.906 15 C -0.165 4.165 16 C -0.063 4.063 17 C -0.160 4.160 18 C 0.089 3.911 19 N -0.504 5.504 20 C 0.095 3.905 21 C 0.089 3.911 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.261 0.739 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.159 0.841 31 H 0.181 0.819 32 H 0.191 0.809 33 H 0.049 0.951 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 7.887 -11.717 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.108 3.892 4 H -0.015 1.015 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.212 1.212 11 H -0.197 1.197 12 H -0.197 1.197 13 N -0.221 5.221 14 C -0.034 4.034 15 C -0.168 4.168 16 C -0.089 4.089 17 C -0.179 4.179 18 C -0.068 4.068 19 N -0.213 5.213 20 C -0.042 4.042 21 C -0.040 4.040 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.177 0.823 31 H 0.198 0.802 32 H 0.208 0.792 33 H 0.067 0.933 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.805 6.922 -11.976 13.856 hybrid contribution 0.807 0.796 1.604 1.964 sum 0.002 7.718 -10.372 12.928 Atomic orbital electron populations 1.21336 0.95678 0.98759 1.00913 1.21421 0.96608 0.97028 0.99470 1.19369 0.90999 0.92245 0.86545 1.01512 1.21140 1.31207 1.11994 0.90356 0.92378 1.25601 0.95327 0.95702 1.01499 1.70001 1.38032 1.24145 1.23567 0.85666 0.78866 0.78725 0.78734 1.21220 1.19697 1.19697 1.65384 1.53341 1.01527 1.01856 1.21272 0.99059 0.92293 0.90753 1.21775 1.01826 0.95833 0.97373 1.21361 0.95288 0.97393 0.94844 1.22503 1.00341 1.00784 0.94308 1.23345 0.95030 0.87025 1.01378 1.66754 1.13294 1.33964 1.07337 1.21826 0.96345 0.95570 0.90505 1.21451 0.98740 0.94686 0.89088 0.94332 0.94169 0.93372 0.95429 0.91549 0.92948 0.89542 0.93634 0.82299 0.80202 0.79182 0.93314 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 9.52 71.98 0.69 -4.13 16 2 C -0.11 -5.15 5.33 30.60 0.16 -4.99 16 3 C 0.22 10.82 1.34 44.17 0.06 10.88 16 4 H -0.03 -1.84 7.91 -2.39 -0.02 -1.86 16 5 C -0.51 -27.07 6.73 25.60 0.17 -26.90 16 6 H 0.06 3.07 7.31 -2.91 -0.02 3.05 16 7 C 0.02 0.96 5.30 84.66 0.45 1.41 16 8 N -0.92 -51.87 11.33 21.45 0.24 -51.63 16 9 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 N -0.50 -21.71 4.64 -876.34 -4.06 -25.78 16 14 C 0.09 3.73 5.65 85.44 0.48 4.21 16 15 C -0.17 -5.59 6.28 -19.68 -0.12 -5.72 16 16 C -0.06 -1.56 10.17 22.42 0.23 -1.34 16 17 C -0.16 -3.16 10.12 22.37 0.23 -2.93 16 18 C 0.09 2.08 11.18 84.69 0.95 3.02 16 19 N -0.50 -16.45 10.36 -183.08 -1.90 -18.34 16 20 C 0.10 3.45 7.44 42.77 0.32 3.77 16 21 C 0.09 3.54 5.40 85.53 0.46 4.01 16 22 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.04 1.91 7.06 -2.39 -0.02 1.89 16 24 H 0.05 2.01 7.75 -2.39 -0.02 2.00 16 25 H 0.03 1.22 7.28 -2.38 -0.02 1.20 16 26 H 0.07 3.57 6.10 -2.39 -0.01 3.56 16 27 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 28 H 0.09 3.32 7.92 -2.38 -0.02 3.30 16 29 H 0.05 1.94 7.76 -2.39 -0.02 1.92 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.05 2.03 7.71 -2.39 -0.02 2.01 16 34 H 0.09 3.49 8.13 -2.39 -0.02 3.47 16 Total: -1.00 -62.36 277.20 1.46 -60.90 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.08 Total: 8.72 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.07 Total: -18.71 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -5.72 Total: -95.74 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.36 1.46 -60.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.294 kcal (2) G-P(sol) polarization free energy of solvation -62.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds