Wall clock time and date at job start Sun Mar 29 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47246 * 2 1 4 4 C 1.30996 * 120.00074 * 127.03465 * 3 2 1 5 5 C 1.50703 * 119.99964 * 7.66333 * 4 3 2 6 6 N 1.46501 * 109.47477 * 127.22476 * 5 4 3 7 7 C 1.38815 * 120.00090 * 179.97438 * 6 5 4 8 8 C 1.39795 * 119.58508 * 0.02562 * 7 6 5 9 9 C 1.38603 * 119.48796 * 179.97438 * 8 7 6 10 10 C 1.38381 * 118.68279 * 0.26695 * 9 8 7 11 11 C 1.40555 * 119.14739 * 359.48786 * 10 9 8 12 12 C 1.41320 * 119.78271 * 180.22541 * 11 10 9 13 13 H 1.07997 * 120.00117 * 0.29614 * 12 11 10 14 14 C 1.40023 * 120.00138 * 180.29159 * 12 11 10 15 15 N 1.30749 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00139 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47067 * 60.00350 * 16 14 12 18 18 H 1.48502 * 109.47175 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47233 * 300.00527 * 16 14 12 20 20 N 1.31963 * 119.58270 * 180.02562 * 7 6 5 21 21 H 1.08998 * 109.46838 * 59.99943 * 1 2 3 22 22 H 1.08997 * 109.47258 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47170 * 300.00125 * 1 2 3 24 24 H 1.08997 * 109.47170 * 239.99874 * 2 1 3 25 25 H 1.08998 * 109.46838 * 120.00057 * 2 1 3 26 26 H 1.07999 * 120.00039 * 307.04047 * 3 2 1 27 27 H 1.08008 * 120.00549 * 187.65489 * 4 3 2 28 28 H 1.08993 * 109.46880 * 7.22588 * 5 4 3 29 29 H 1.09000 * 109.46995 * 247.22282 * 5 4 3 30 30 H 0.97003 * 119.99705 * 0.02562 * 6 5 4 31 31 H 1.07993 * 120.25549 * 359.96838 * 8 7 6 32 32 H 1.08000 * 120.65273 * 180.02562 * 9 8 7 33 33 H 1.08004 * 120.42553 * 179.72241 * 10 9 8 34 34 H 0.96993 * 120.00196 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8950 1.8105 0.9056 5 6 3.5159 0.8024 1.8380 6 7 4.9747 0.9299 1.7936 7 6 5.7679 0.1007 2.5748 8 6 5.1656 -0.8534 3.4002 9 6 5.9596 -1.6806 4.1789 10 6 7.3340 -1.5312 4.1185 11 6 7.8798 -0.5569 3.2650 12 6 9.2818 -0.3961 3.1892 13 1 9.9302 -1.0239 3.7823 14 6 9.8303 0.5771 2.3450 15 7 9.0453 1.3375 1.6272 16 14 11.6834 0.7902 2.2454 17 1 12.3031 -0.4772 1.7818 18 1 12.0057 1.8786 1.2879 19 1 12.2145 1.1389 3.5876 20 7 7.0811 0.2229 2.5288 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6813 2.1176 -0.7466 27 1 3.1612 2.8543 0.9840 28 1 3.2295 -0.2028 1.5290 29 1 3.1661 0.9838 2.8543 30 1 5.3863 1.5942 1.2190 31 1 4.0901 -0.9450 3.4310 32 1 5.5142 -2.4243 4.8230 33 1 7.9791 -2.1577 4.7167 34 1 9.4252 2.0119 1.0428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324722698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:47 Heat of formation + Delta-G solvation = 49.280198 kcal Electronic energy + Delta-G solvation = -15371.587977 eV Core-core repulsion = 12883.582678 eV Total energy + Delta-G solvation = -2488.005300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.30588 -36.80087 -34.35410 -33.12318 -30.90526 -30.21115 -28.60288 -25.38754 -25.03043 -23.25877 -21.43349 -20.40581 -18.43832 -17.32334 -16.13231 -15.79944 -14.81288 -14.65514 -14.29842 -14.00243 -13.82164 -13.24201 -12.88947 -12.79492 -12.14286 -12.07229 -11.87907 -11.61579 -11.14405 -11.03456 -10.97541 -10.64696 -10.45137 -10.34704 -9.91498 -9.47419 -9.05902 -8.73865 -7.86421 -7.46651 -6.45409 -6.28658 -4.43809 2.18929 2.92578 3.12610 3.15393 3.27931 3.34147 4.01364 4.45026 4.79807 4.88505 5.03463 5.21383 5.29744 5.52124 5.60764 5.83450 5.92206 6.04559 6.06931 6.14622 6.17586 6.19895 6.61043 6.68000 6.86222 6.90717 6.94046 7.00502 7.29397 7.64146 7.85762 7.96160 8.20844 8.41366 8.74317 8.84569 9.16711 10.29054 10.44714 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.034617 B = 0.005571 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.645664 B = 5025.114227 C = 5660.225254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.148 4.148 4 C -0.165 4.165 5 C 0.161 3.839 6 N -0.735 5.735 7 C 0.411 3.589 8 C -0.368 4.368 9 C -0.032 4.032 10 C -0.317 4.317 11 C 0.293 3.707 12 C -0.436 4.436 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.717 5.717 16 Si 0.905 3.095 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.266 1.266 20 N -0.532 5.532 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.396 0.604 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 0.774 -3.225 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.167 4.167 4 C -0.183 4.183 5 C 0.036 3.964 6 N -0.372 5.372 7 C 0.171 3.829 8 C -0.394 4.394 9 C -0.056 4.056 10 C -0.340 4.340 11 C 0.166 3.834 12 C -0.468 4.468 13 H 0.101 0.899 14 C -0.153 4.153 15 N -0.338 5.338 16 Si 0.730 3.270 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.190 1.190 20 N -0.254 5.254 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.230 0.770 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.080 1.480 -3.841 10.888 hybrid contribution 0.521 -0.165 0.262 0.606 sum -9.559 1.315 -3.579 10.291 Atomic orbital electron populations 1.21687 0.95257 1.01516 1.01711 1.20855 0.95834 0.94857 1.03274 1.22784 0.98824 0.97418 0.97704 1.22944 0.98349 0.99628 0.97397 1.20238 0.81325 0.97222 0.97631 1.44082 1.02788 1.41088 1.49234 1.18534 0.89696 0.87160 0.87472 1.20604 0.97672 1.08546 1.12612 1.20590 0.93769 0.95732 0.95527 1.21528 0.94213 1.07941 1.10358 1.18196 0.92887 0.86193 0.86161 1.19546 0.90692 1.15391 1.21156 0.89948 1.26046 0.99762 0.94993 0.94538 1.70147 1.35897 1.12378 1.15423 0.86439 0.82931 0.78713 0.78958 1.19018 1.20374 1.19026 1.68217 0.99893 1.29425 1.27817 0.92919 0.92650 0.92683 0.91217 0.90192 0.87284 0.86966 0.91778 0.92688 0.76991 0.89261 0.88958 0.88728 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.90 37.16 0.37 -0.95 16 2 C -0.11 -1.24 6.02 -27.88 -0.17 -1.41 16 3 C -0.15 -1.75 9.51 -36.03 -0.34 -2.09 16 4 C -0.16 -2.22 9.63 -36.02 -0.35 -2.57 16 5 C 0.16 2.64 4.96 -5.19 -0.03 2.61 16 6 N -0.74 -15.39 5.71 -61.57 -0.35 -15.74 16 7 C 0.41 10.38 7.65 -155.32 -1.19 9.20 16 8 C -0.37 -8.75 9.34 -38.87 -0.36 -9.12 16 9 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 10 C -0.32 -8.22 9.83 -38.66 -0.38 -8.60 16 11 C 0.29 8.35 6.55 -85.00 -0.56 7.79 16 12 C -0.44 -12.04 9.14 -37.74 -0.34 -12.39 16 13 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 14 C 0.07 1.87 5.50 -17.34 -0.10 1.77 16 15 N -0.72 -19.43 11.46 55.55 0.64 -18.79 16 16 Si 0.91 19.01 29.56 -169.99 -5.02 13.98 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 N -0.53 -15.10 7.89 -10.33 -0.08 -15.18 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.97 5.30 -51.93 -0.28 0.69 16 26 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.06 1.04 5.08 -51.93 -0.26 0.78 16 29 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 30 H 0.40 8.29 8.58 -40.82 -0.35 7.94 16 31 H 0.09 1.88 6.68 -52.49 -0.35 1.53 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -29.95 288.61 -8.90 -38.85 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.58 Total: 9.44 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.84 Total: -16.90 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.20 Total: -49.71 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.95 -8.90 -38.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324722698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.127 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds