Wall clock time and date at job start Sun Mar 29 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47246 * 2 1 4 4 C 1.30996 * 120.00074 * 127.03465 * 3 2 1 5 5 C 1.50703 * 119.99964 * 7.66333 * 4 3 2 6 6 N 1.46501 * 109.47477 * 127.22476 * 5 4 3 7 7 C 1.38815 * 120.00090 * 179.97438 * 6 5 4 8 8 C 1.39795 * 119.58508 * 0.02562 * 7 6 5 9 9 C 1.38603 * 119.48796 * 179.97438 * 8 7 6 10 10 C 1.38381 * 118.68279 * 0.26695 * 9 8 7 11 11 C 1.40555 * 119.14739 * 359.48786 * 10 9 8 12 12 C 1.41320 * 119.78271 * 180.22541 * 11 10 9 13 13 H 1.07997 * 120.00117 * 0.29614 * 12 11 10 14 14 C 1.40023 * 120.00138 * 180.29159 * 12 11 10 15 15 N 1.30749 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00139 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47067 * 60.00350 * 16 14 12 18 18 H 1.48502 * 109.47175 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47233 * 300.00527 * 16 14 12 20 20 N 1.31963 * 119.58270 * 180.02562 * 7 6 5 21 21 H 1.08998 * 109.46838 * 59.99943 * 1 2 3 22 22 H 1.08997 * 109.47258 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47170 * 300.00125 * 1 2 3 24 24 H 1.08997 * 109.47170 * 239.99874 * 2 1 3 25 25 H 1.08998 * 109.46838 * 120.00057 * 2 1 3 26 26 H 1.07999 * 120.00039 * 307.04047 * 3 2 1 27 27 H 1.08008 * 120.00549 * 187.65489 * 4 3 2 28 28 H 1.08993 * 109.46880 * 7.22588 * 5 4 3 29 29 H 1.09000 * 109.46995 * 247.22282 * 5 4 3 30 30 H 0.97003 * 119.99705 * 0.02562 * 6 5 4 31 31 H 1.07993 * 120.25549 * 359.96838 * 8 7 6 32 32 H 1.08000 * 120.65273 * 180.02562 * 9 8 7 33 33 H 1.08004 * 120.42553 * 179.72241 * 10 9 8 34 34 H 0.96993 * 120.00196 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8950 1.8105 0.9056 5 6 3.5159 0.8024 1.8380 6 7 4.9747 0.9299 1.7936 7 6 5.7679 0.1007 2.5748 8 6 5.1656 -0.8534 3.4002 9 6 5.9596 -1.6806 4.1789 10 6 7.3340 -1.5312 4.1185 11 6 7.8798 -0.5569 3.2650 12 6 9.2818 -0.3961 3.1892 13 1 9.9302 -1.0239 3.7823 14 6 9.8303 0.5771 2.3450 15 7 9.0453 1.3375 1.6272 16 14 11.6834 0.7902 2.2454 17 1 12.3031 -0.4772 1.7818 18 1 12.0057 1.8786 1.2879 19 1 12.2145 1.1389 3.5876 20 7 7.0811 0.2229 2.5288 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6813 2.1176 -0.7466 27 1 3.1612 2.8543 0.9840 28 1 3.2295 -0.2028 1.5290 29 1 3.1661 0.9838 2.8543 30 1 5.3863 1.5942 1.2190 31 1 4.0901 -0.9450 3.4310 32 1 5.5142 -2.4243 4.8230 33 1 7.9791 -2.1577 4.7167 34 1 9.4252 2.0119 1.0428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324722698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:46 Heat of formation + Delta-G solvation = 32.460108 kcal Electronic energy + Delta-G solvation = -15372.317351 eV Core-core repulsion = 12883.582678 eV Total energy + Delta-G solvation = -2488.734674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15455 -38.06552 -35.93697 -34.89415 -32.40654 -31.86115 -30.27117 -27.30451 -26.44439 -24.17687 -23.31938 -22.26824 -19.66071 -19.17573 -17.85677 -16.99206 -16.52669 -16.39452 -15.89395 -15.32660 -15.01005 -14.76107 -14.43987 -14.43748 -13.68720 -13.50569 -12.94347 -12.85798 -12.76887 -12.72998 -12.54668 -12.23447 -11.87075 -11.75805 -11.50648 -11.22003 -10.68013 -10.01749 -9.80189 -9.44691 -8.28505 -8.22312 -6.48159 1.06946 1.14992 1.34631 1.41822 1.54118 1.60100 2.25786 2.85684 2.93087 3.80446 4.04741 4.11699 4.23270 4.37507 4.46483 4.52167 4.63632 4.75739 4.80666 4.91882 5.00578 5.02386 5.11086 5.13744 5.23809 5.36604 5.38281 5.67791 5.71803 5.86675 5.96662 6.08005 6.22966 6.56296 6.84022 6.95136 7.22381 8.34572 8.51894 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.034617 B = 0.005571 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.645664 B = 5025.114227 C = 5660.225254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.126 4.126 4 C -0.187 4.187 5 C 0.161 3.839 6 N -0.731 5.731 7 C 0.392 3.608 8 C -0.369 4.369 9 C -0.029 4.029 10 C -0.344 4.344 11 C 0.258 3.742 12 C -0.473 4.473 13 H 0.088 0.912 14 C 0.026 3.974 15 N -0.754 5.754 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.259 1.259 20 N -0.566 5.566 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.392 0.608 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 0.770 -3.740 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.144 4.144 4 C -0.205 4.205 5 C 0.038 3.962 6 N -0.366 5.366 7 C 0.151 3.849 8 C -0.395 4.395 9 C -0.053 4.053 10 C -0.367 4.367 11 C 0.131 3.869 12 C -0.505 4.505 13 H 0.106 0.894 14 C -0.196 4.196 15 N -0.376 5.376 16 Si 0.807 3.193 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.184 1.184 20 N -0.289 5.289 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.150 0.850 27 H 0.136 0.864 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.122 0.878 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.020 1.475 -4.357 11.941 hybrid contribution 0.604 -0.195 0.391 0.746 sum -10.416 1.280 -3.965 11.219 Atomic orbital electron populations 1.21659 0.93444 1.02319 1.02345 1.20926 0.97420 0.94292 1.02766 1.23076 0.96837 0.98036 0.96499 1.22776 1.00099 0.99279 0.98364 1.20395 0.78724 0.98564 0.98558 1.44308 1.04381 1.39935 1.48023 1.19009 0.89509 0.88118 0.88221 1.20954 0.99157 1.07707 1.11705 1.21013 0.93018 0.95982 0.95322 1.21701 0.95617 1.08356 1.11011 1.18699 0.93817 0.87255 0.87148 1.19936 0.91066 1.16854 1.22633 0.89440 1.26981 1.05147 0.93986 0.93484 1.70251 1.38356 1.12944 1.16015 0.85201 0.75861 0.78955 0.79239 1.18344 1.19292 1.18373 1.68194 1.01379 1.30442 1.28895 0.91719 0.91860 0.92612 0.90973 0.91426 0.84990 0.86434 0.91370 0.92803 0.77393 0.86492 0.85160 0.87824 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.90 71.98 0.71 -1.47 16 2 C -0.12 -2.35 6.02 29.85 0.18 -2.17 16 3 C -0.13 -2.66 9.51 25.65 0.24 -2.42 16 4 C -0.19 -4.79 9.63 25.65 0.25 -4.54 16 5 C 0.16 5.16 4.96 85.63 0.43 5.58 16 6 N -0.73 -30.80 5.71 -348.72 -1.99 -32.80 16 7 C 0.39 20.02 7.65 133.42 1.02 21.04 16 8 C -0.37 -17.27 9.34 22.73 0.21 -17.05 16 9 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 10 C -0.34 -18.05 9.83 22.87 0.22 -17.83 16 11 C 0.26 15.15 6.55 40.18 0.26 15.42 16 12 C -0.47 -26.89 9.14 23.46 0.21 -26.67 16 13 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 14 C 0.03 1.36 5.50 85.29 0.47 1.82 16 15 N -0.75 -41.83 11.46 21.84 0.25 -41.58 16 16 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 N -0.57 -33.06 7.89 -186.59 -1.47 -34.53 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.53 5.30 -2.39 -0.01 1.52 16 26 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.07 2.14 5.08 -2.39 -0.01 2.13 16 29 H 0.05 1.73 7.92 -2.39 -0.02 1.71 16 30 H 0.39 16.76 8.58 -92.71 -0.80 15.96 16 31 H 0.12 4.71 6.68 -2.91 -0.02 4.69 16 32 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 Total: -1.00 -65.76 288.61 3.55 -62.20 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.30 Total: 34.79 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 4.44 Total: -29.42 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -3.21 Total: -108.90 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -65.76 3.55 -62.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324722698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.664 kcal (2) G-P(sol) polarization free energy of solvation -65.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds