Wall clock time and date at job start Sun Mar 29 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00368 * 2 1 4 4 H 1.48498 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47425 * 300.00056 * 3 2 1 6 6 H 1.48501 * 109.47076 * 60.00084 * 3 2 1 7 7 C 1.38950 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00052 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00083 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00365 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00107 * 180.02562 * 10 9 7 13 13 C 1.52989 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.53046 * 113.15245 * 275.37017 * 13 12 10 15 15 S 1.81421 * 89.89146 * 211.85103 * 14 13 12 16 16 O 1.42100 * 112.75626 * 280.47671 * 15 14 13 17 17 O 1.42102 * 112.75037 * 136.72699 * 15 14 13 18 18 C 1.53046 * 113.15293 * 174.99935 * 13 12 10 19 19 H 0.97003 * 119.99493 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99621 * 359.97438 * 9 7 2 21 21 H 1.09003 * 109.47000 * 59.98851 * 12 10 9 22 22 H 1.09005 * 109.46757 * 299.99893 * 12 10 9 23 23 H 1.08997 * 112.53000 * 45.18339 * 13 12 10 24 24 H 1.08999 * 113.14496 * 327.11375 * 14 13 12 25 25 H 1.08999 * 113.14487 * 96.59446 * 14 13 12 26 26 H 1.08997 * 113.14353 * 263.40546 * 18 13 12 27 27 H 1.08999 * 113.14822 * 32.88700 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0034 13 6 2.2376 -6.0259 -0.0036 14 6 2.7298 -6.3965 -1.4046 15 16 2.8814 -8.1293 -0.8892 16 8 4.0659 -8.3800 -0.1454 17 8 2.3871 -9.0378 -1.8638 18 6 1.5630 -7.3943 0.1173 19 1 -0.4849 0.8401 0.0004 20 1 0.3533 -2.3906 -0.0016 21 1 0.6177 -4.9201 -0.8940 22 1 0.6159 -4.9213 0.8859 23 1 3.0479 -5.8829 0.7113 24 1 1.9768 -6.2436 -2.1776 25 1 3.6865 -5.9394 -1.6574 26 1 1.5424 -7.7730 1.1392 27 1 0.5851 -7.4338 -0.3624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542735245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:17 Heat of formation + Delta-G solvation = -92.890641 kcal Electronic energy + Delta-G solvation = -14246.564258 eV Core-core repulsion = 11518.453068 eV Total energy + Delta-G solvation = -2728.111190 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.69334 -37.31844 -36.52987 -35.97506 -33.94757 -31.32177 -28.81430 -26.59567 -24.76484 -21.08169 -19.20863 -18.79944 -17.95757 -16.50955 -16.25314 -16.19932 -15.79870 -14.96639 -14.46590 -14.01599 -13.74691 -13.10213 -12.86948 -12.46898 -12.24901 -12.21749 -11.99899 -11.59979 -11.16485 -11.08454 -10.87920 -10.47891 -10.38090 -10.26077 -10.22084 -9.58412 -8.46946 -8.03635 -6.47814 -3.88893 0.18286 2.00913 3.12175 3.23432 3.30473 3.68476 3.83246 4.00042 4.12381 4.30890 4.79703 4.89989 5.15731 5.19500 5.24342 5.44043 5.55576 5.80697 5.87529 6.09163 6.31773 6.34471 7.49895 7.99529 8.53475 9.11330 9.47726 9.98128 10.69775 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.073241 B = 0.005138 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.209597 B = 5448.332182 C = 5621.894480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.438 3.562 11 O -0.595 6.595 12 C -0.109 4.109 13 C -0.044 4.044 14 C -0.584 4.584 15 S 2.400 3.600 16 O -0.919 6.919 17 O -0.938 6.938 18 C -0.599 4.599 19 H 0.272 0.728 20 H 0.393 0.607 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.121 0.879 24 H 0.139 0.861 25 H 0.129 0.871 26 H 0.122 0.878 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -12.133 -0.864 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.224 3.776 11 O -0.481 6.481 12 C -0.151 4.151 13 C -0.065 4.065 14 C -0.714 4.714 15 S 2.584 3.416 16 O -0.916 6.916 17 O -0.935 6.935 18 C -0.728 4.728 19 H 0.082 0.918 20 H 0.226 0.774 21 H 0.102 0.898 22 H 0.105 0.895 23 H 0.139 0.861 24 H 0.157 0.843 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.616 -13.021 -1.080 13.080 hybrid contribution -0.914 1.973 0.220 2.185 sum -0.298 -11.048 -0.860 11.086 Atomic orbital electron populations 1.69619 1.05968 1.28159 1.50397 1.25281 0.95644 0.99811 0.97180 0.85796 0.79719 0.81057 0.77757 1.19196 1.20708 1.20704 1.19781 0.93447 0.82287 1.47645 0.87815 1.41913 1.09271 1.04722 1.63797 1.19869 0.88326 0.84954 0.84490 1.90514 1.13917 1.87345 1.56320 1.21325 0.97609 0.92697 1.03510 1.21154 0.98445 0.92165 0.94744 1.30947 1.11038 1.23678 1.05718 1.08594 0.77456 0.77577 0.77990 1.93702 1.42792 1.84847 1.70286 1.93610 1.80467 1.61963 1.57441 1.31073 1.17833 1.08209 1.15672 0.91848 0.77353 0.89777 0.89511 0.86082 0.84263 0.85248 0.85919 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.36 15 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 15 3 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 15 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 15 9 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 15 10 C 0.44 9.79 7.78 -10.98 -0.09 9.71 15 11 O -0.60 -15.33 15.35 5.55 0.09 -15.25 15 12 C -0.11 -1.71 5.48 -27.89 -0.15 -1.86 15 13 C -0.04 -0.60 2.80 -90.58 -0.25 -0.85 15 14 C -0.58 -6.91 7.48 37.18 0.28 -6.63 15 15 S 2.40 24.90 7.55 -107.50 -0.81 24.08 15 16 O -0.92 -12.77 18.18 -57.30 -1.04 -13.81 15 17 O -0.94 -12.12 18.18 -57.30 -1.04 -13.17 15 18 C -0.60 -5.52 7.50 37.18 0.28 -5.24 15 19 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 20 H 0.39 9.20 7.90 -40.82 -0.32 8.88 15 21 H 0.08 1.14 7.89 -51.93 -0.41 0.73 15 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.12 1.80 7.71 -51.93 -0.40 1.40 15 24 H 0.14 1.42 7.94 -51.93 -0.41 1.01 15 25 H 0.13 1.65 8.14 -51.93 -0.42 1.23 15 26 H 0.12 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.14 1.05 8.12 -51.93 -0.42 0.63 15 LS Contribution 254.14 15.07 3.83 3.83 Total: -1.00 -35.20 254.14 -6.26 -41.46 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.75 Total: 7.16 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.18 Total: -12.79 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.67 Total: -37.23 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -2.00 Total: -42.22 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 24.90 SS G_CDS: -0.81 Total: 24.08 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.20 -6.26 -41.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.430 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds