Wall clock time and date at job start Sun Mar 29 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00368 * 2 1 4 4 H 1.48498 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47425 * 300.00056 * 3 2 1 6 6 H 1.48501 * 109.47076 * 60.00084 * 3 2 1 7 7 C 1.38950 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00052 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00083 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00365 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00107 * 180.02562 * 10 9 7 13 13 C 1.52989 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.53046 * 113.15245 * 275.37017 * 13 12 10 15 15 S 1.81421 * 89.89146 * 211.85103 * 14 13 12 16 16 O 1.42100 * 112.75626 * 280.47671 * 15 14 13 17 17 O 1.42102 * 112.75037 * 136.72699 * 15 14 13 18 18 C 1.53046 * 113.15293 * 174.99935 * 13 12 10 19 19 H 0.97003 * 119.99493 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99621 * 359.97438 * 9 7 2 21 21 H 1.09003 * 109.47000 * 59.98851 * 12 10 9 22 22 H 1.09005 * 109.46757 * 299.99893 * 12 10 9 23 23 H 1.08997 * 112.53000 * 45.18339 * 13 12 10 24 24 H 1.08999 * 113.14496 * 327.11375 * 14 13 12 25 25 H 1.08999 * 113.14487 * 96.59446 * 14 13 12 26 26 H 1.08997 * 113.14353 * 263.40546 * 18 13 12 27 27 H 1.08999 * 113.14822 * 32.88700 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0034 13 6 2.2376 -6.0259 -0.0036 14 6 2.7298 -6.3965 -1.4046 15 16 2.8814 -8.1293 -0.8892 16 8 4.0659 -8.3800 -0.1454 17 8 2.3871 -9.0378 -1.8638 18 6 1.5630 -7.3943 0.1173 19 1 -0.4849 0.8401 0.0004 20 1 0.3533 -2.3906 -0.0016 21 1 0.6177 -4.9201 -0.8940 22 1 0.6159 -4.9213 0.8859 23 1 3.0479 -5.8829 0.7113 24 1 1.9768 -6.2436 -2.1776 25 1 3.6865 -5.9394 -1.6574 26 1 1.5424 -7.7730 1.1392 27 1 0.5851 -7.4338 -0.3624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542735245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:16 Heat of formation + Delta-G solvation = -121.727280 kcal Electronic energy + Delta-G solvation = -14247.814708 eV Core-core repulsion = 11518.453068 eV Total energy + Delta-G solvation = -2729.361640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33047 -38.34284 -37.71802 -36.98223 -35.89054 -33.28772 -30.19320 -27.44222 -26.66874 -22.35744 -20.79362 -19.89072 -19.69063 -17.84622 -17.33964 -17.20847 -16.98269 -16.50574 -16.05504 -15.76228 -15.24505 -14.29893 -14.00730 -13.79741 -13.49401 -13.30858 -13.23399 -13.21060 -12.88989 -12.41958 -12.15914 -12.14012 -11.95401 -11.52080 -11.43875 -11.15117 -10.32118 -10.01513 -8.47950 -5.96328 -0.70370 1.16317 1.35506 1.41201 1.54756 2.07125 2.29179 2.81329 3.07301 3.18911 3.25035 3.55375 3.81347 4.10220 4.30593 4.41914 4.59277 4.71604 4.84119 4.86703 5.06410 5.25884 5.41033 5.99901 6.58979 7.12212 7.57248 8.12539 8.69540 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.073241 B = 0.005138 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.209597 B = 5448.332182 C = 5621.894480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.434 3.566 11 O -0.635 6.635 12 C -0.101 4.101 13 C -0.064 4.064 14 C -0.597 4.597 15 S 2.441 3.559 16 O -0.956 6.956 17 O -0.957 6.957 18 C -0.566 4.566 19 H 0.277 0.723 20 H 0.398 0.602 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.099 0.901 24 H 0.159 0.841 25 H 0.110 0.890 26 H 0.148 0.852 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -12.793 -0.791 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.222 3.778 11 O -0.522 6.522 12 C -0.142 4.142 13 C -0.085 4.085 14 C -0.726 4.726 15 S 2.627 3.373 16 O -0.953 6.953 17 O -0.954 6.954 18 C -0.697 4.697 19 H 0.087 0.913 20 H 0.232 0.768 21 H 0.132 0.868 22 H 0.131 0.869 23 H 0.117 0.883 24 H 0.177 0.823 25 H 0.129 0.871 26 H 0.166 0.834 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.824 -13.698 -1.022 13.760 hybrid contribution -0.461 2.145 0.200 2.203 sum -1.285 -11.553 -0.823 11.653 Atomic orbital electron populations 1.69669 1.06750 1.29209 1.50409 1.26005 0.96530 1.02344 0.96341 0.84908 0.78018 0.77309 0.78341 1.19929 1.19612 1.19619 1.19710 0.92691 0.84260 1.49839 0.90444 1.42008 1.09434 1.04827 1.64916 1.21145 0.88277 0.86579 0.81754 1.90490 1.16175 1.88294 1.57288 1.21369 0.97757 0.88954 1.06150 1.21161 0.98266 0.93712 0.95331 1.31141 1.10826 1.24966 1.05666 1.07345 0.76863 0.76001 0.77137 1.93649 1.45481 1.85170 1.71030 1.93580 1.80746 1.62441 1.58679 1.30863 1.17823 1.03877 1.17103 0.91307 0.76799 0.86841 0.86886 0.88262 0.82323 0.87091 0.83376 0.80904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.66 0.28 -48.46 15 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 15 3 Si 0.99 42.45 29.55 68.60 2.03 44.48 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 7 C -0.34 -18.74 9.68 84.04 0.81 -17.93 15 8 H 0.08 4.65 7.16 -2.91 -0.02 4.62 15 9 N -0.58 -28.50 5.29 -306.97 -1.62 -30.12 15 10 C 0.43 19.41 7.78 87.66 0.68 20.09 15 11 O -0.63 -33.53 15.35 -3.07 -0.05 -33.58 15 12 C -0.10 -2.90 5.48 29.85 0.16 -2.74 15 13 C -0.06 -1.58 2.80 -10.77 -0.03 -1.61 15 14 C -0.60 -13.33 7.48 72.00 0.54 -12.79 15 15 S 2.44 46.19 7.55 -56.49 -0.43 45.76 15 16 O -0.96 -25.91 18.18 -127.88 -2.32 -28.24 15 17 O -0.96 -22.67 18.18 -127.88 -2.32 -24.99 15 18 C -0.57 -8.16 7.50 72.00 0.54 -7.62 15 19 H 0.28 13.75 8.31 -92.71 -0.77 12.98 15 20 H 0.40 18.53 7.90 -92.71 -0.73 17.80 15 21 H 0.11 2.65 7.89 -2.39 -0.02 2.63 15 22 H 0.11 2.70 8.14 -2.38 -0.02 2.68 15 23 H 0.10 2.93 7.71 -2.39 -0.02 2.91 15 24 H 0.16 2.85 7.94 -2.39 -0.02 2.83 15 25 H 0.11 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.15 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.17 1.56 8.12 -2.39 -0.02 1.54 15 Total: -1.00 -76.86 254.14 -0.80 -77.66 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.46 Total: 20.29 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.17 Total: -22.79 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -1.34 Total: -78.58 kcal Atomic # 8 Polarization: -82.12 SS G_CDS: -4.70 Total: -86.81 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.43 Total: 45.76 kcal Total: -76.86 -0.80 -77.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.067 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds