Wall clock time and date at job start Sun Mar 29 2020 21:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47255 * 2 1 4 4 C 1.36876 * 120.00343 * 278.24314 * 3 2 1 5 5 H 1.08002 * 120.00276 * 178.54731 * 4 3 2 6 6 C 1.39046 * 119.99591 * 358.54773 * 4 3 2 7 7 N 1.31368 * 120.00184 * 13.17222 * 6 4 3 8 8 Si 1.86802 * 120.00058 * 193.17129 * 6 4 3 9 9 H 1.48503 * 109.46908 * 59.99908 * 8 6 4 10 10 H 1.48499 * 109.47433 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46913 * 300.00186 * 8 6 4 12 12 C 1.34774 * 120.00019 * 98.24479 * 3 2 1 13 13 O 1.21594 * 120.00044 * 185.95404 * 12 3 2 14 14 C 1.47723 * 120.00248 * 5.94963 * 12 3 2 15 15 C 1.39676 * 120.14928 * 315.58476 * 14 12 3 16 16 C 1.37916 * 119.84528 * 180.29549 * 15 14 12 17 17 C 1.38402 * 120.14788 * 359.44490 * 16 15 14 18 18 C 1.38349 * 120.30868 * 0.28372 * 17 16 15 19 19 C 1.50699 * 119.92495 * 180.02562 * 18 17 16 20 20 C 1.37966 * 120.15159 * 359.97438 * 18 17 16 21 21 H 1.09005 * 109.46805 * 191.69662 * 1 2 3 22 22 H 1.09002 * 109.46439 * 311.69052 * 1 2 3 23 23 H 1.08997 * 109.47130 * 71.69145 * 1 2 3 24 24 H 1.09003 * 109.46768 * 240.00143 * 2 1 3 25 25 H 1.09001 * 109.47468 * 120.00377 * 2 1 3 26 26 H 0.96998 * 119.99951 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.07723 * 0.02562 * 15 14 12 28 28 H 1.07996 * 119.92585 * 179.72963 * 16 15 14 29 29 H 1.07999 * 119.84455 * 180.25922 * 17 16 15 30 30 H 1.08996 * 109.47591 * 89.99279 * 19 18 17 31 31 H 1.09000 * 109.47368 * 209.99895 * 19 18 17 32 32 H 1.09004 * 109.46870 * 329.99763 * 19 18 17 33 33 H 1.07994 * 120.07385 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0863 2.0831 -1.1731 5 1 2.4241 3.1089 -1.1698 6 6 1.7204 1.4754 -2.3690 7 7 1.0716 0.3332 -2.3538 8 14 2.1513 2.2832 -3.9973 9 1 3.6256 2.4263 -4.1039 10 1 1.6531 1.4415 -5.1147 11 1 1.5174 3.6243 -4.0676 12 6 2.4008 1.9607 1.1551 13 8 2.7030 3.1383 1.1736 14 6 2.4528 1.1653 2.3988 15 6 1.4085 0.2946 2.7189 16 6 1.4607 -0.4404 3.8847 17 6 2.5499 -0.3254 4.7308 18 6 3.5904 0.5308 4.4171 19 6 4.7725 0.6488 5.3443 20 6 3.5487 1.2760 3.2568 21 1 -0.3633 -1.0064 0.2084 22 1 -0.3632 0.6835 0.7675 23 1 -0.3633 0.3228 -0.9756 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.8167 -0.0908 -3.1881 27 1 0.5602 0.2006 2.0573 28 1 0.6520 -1.1107 4.1357 29 1 2.5877 -0.9065 5.6404 30 1 5.5300 -0.0824 5.0623 31 1 5.1917 1.6524 5.2727 32 1 4.4507 0.4617 6.3688 33 1 4.3614 1.9443 3.0133 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:51 Heat of formation + Delta-G solvation = 11.659535 kcal Electronic energy + Delta-G solvation = -16394.536309 eV Core-core repulsion = 13807.180993 eV Total energy + Delta-G solvation = -2587.355316 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53517 -37.65158 -35.18647 -32.77491 -31.52090 -30.43258 -29.55213 -26.57061 -25.30270 -22.81721 -21.96990 -21.22558 -19.08831 -16.87071 -16.24572 -16.02313 -14.93297 -14.68878 -14.16470 -13.76629 -13.59932 -13.42028 -13.16215 -12.55131 -12.34221 -12.01876 -11.94466 -11.54342 -11.20599 -11.09457 -10.95731 -10.75096 -10.50438 -10.36261 -10.12605 -9.94403 -8.86741 -8.56986 -8.35634 -8.12956 -7.79569 -6.28200 -3.82563 1.57845 1.79532 3.15796 3.21476 3.25974 3.77369 4.06129 4.35490 4.82745 5.09456 5.12318 5.27337 5.41557 5.51290 5.67013 5.73927 5.87470 5.99299 6.00827 6.27208 6.39326 6.46177 6.59281 6.74046 6.77417 6.85942 6.90502 7.02010 7.34663 7.38583 7.57193 7.80938 8.04159 8.49627 9.13622 9.39607 9.96190 10.58779 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.039608 B = 0.007460 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.758590 B = 3752.504499 C = 4213.627113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.428 5.428 4 C -0.292 4.292 5 H 0.106 0.894 6 C 0.023 3.977 7 N -0.871 5.871 8 Si 0.933 3.067 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.467 3.533 13 O -0.595 6.595 14 C -0.084 4.084 15 C -0.114 4.114 16 C -0.127 4.127 17 C -0.123 4.123 18 C -0.100 4.100 19 C -0.109 4.109 20 C -0.084 4.084 21 H 0.034 0.966 22 H 0.025 0.975 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.041 0.959 26 H 0.267 0.733 27 H 0.142 0.858 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -5.368 8.545 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.144 5.144 4 C -0.420 4.420 5 H 0.124 0.876 6 C -0.178 4.178 7 N -0.512 5.512 8 Si 0.759 3.241 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.257 3.743 13 O -0.482 6.482 14 C -0.088 4.088 15 C -0.133 4.133 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.101 4.101 19 C -0.166 4.166 20 C -0.103 4.103 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.119 0.881 24 H 0.134 0.866 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.159 0.841 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.388 -4.931 8.333 9.782 hybrid contribution -0.003 0.148 -0.762 0.776 sum 1.385 -4.783 7.572 9.062 Atomic orbital electron populations 1.22372 0.96751 0.98230 1.03565 1.22069 0.94644 0.83354 1.01765 1.43785 1.52770 1.12114 1.05775 1.19837 1.40900 0.98349 0.82893 0.87632 1.25317 0.96092 0.96592 0.99826 1.70055 1.36363 1.17668 1.27156 0.85885 0.79132 0.78857 0.80204 1.19895 1.20838 1.19852 1.17868 0.86034 0.87315 0.83108 1.90599 1.56217 1.15831 1.85554 1.20256 0.95205 0.96957 0.96375 1.22014 0.99356 0.95028 0.96873 1.21015 0.98350 1.00378 0.94802 1.20990 0.94241 0.99248 0.99701 1.19764 0.96641 0.97706 0.95943 1.20734 0.95738 1.02324 0.97769 1.21031 0.97639 0.98448 0.93159 0.94655 0.95580 0.88127 0.86620 0.94075 0.92199 0.84076 0.86277 0.86648 0.91526 0.91669 0.91919 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.51 37.16 0.32 -2.91 16 2 C 0.10 2.41 4.88 -4.04 -0.02 2.39 16 3 N -0.43 -11.25 2.64 -115.93 -0.31 -11.55 16 4 C -0.29 -8.11 9.49 -15.00 -0.14 -8.25 16 5 H 0.11 3.08 7.20 -52.49 -0.38 2.71 16 6 C 0.02 0.59 5.33 -17.45 -0.09 0.49 16 7 N -0.87 -21.68 7.28 55.50 0.40 -21.27 16 8 Si 0.93 20.34 29.57 -169.99 -5.03 15.32 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.47 12.23 7.23 -12.39 -0.09 12.14 16 13 O -0.60 -17.50 16.57 5.28 0.09 -17.42 16 14 C -0.08 -1.83 5.13 -104.97 -0.54 -2.37 16 15 C -0.11 -2.15 7.39 -39.16 -0.29 -2.44 16 16 C -0.13 -1.97 10.03 -39.64 -0.40 -2.37 16 17 C -0.12 -1.79 9.69 -39.48 -0.38 -2.17 16 18 C -0.10 -1.57 5.87 -104.68 -0.61 -2.18 16 19 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 20 C -0.08 -1.60 9.34 -39.17 -0.37 -1.96 16 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.03 0.54 6.60 -51.93 -0.34 0.20 16 23 H 0.10 2.39 5.84 -51.93 -0.30 2.09 16 24 H 0.12 2.85 5.73 -51.93 -0.30 2.56 16 25 H 0.04 0.87 4.96 -51.93 -0.26 0.61 16 26 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 27 H 0.14 2.68 3.73 -52.49 -0.20 2.48 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 269.30 15.07 4.06 4.06 Total: -1.00 -29.77 269.30 -6.90 -36.68 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.86 Total: 4.75 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.26 Total: -10.56 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.10 Total: -32.82 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.09 Total: -17.42 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.77 -6.90 -36.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.337 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds