Wall clock time and date at job start Sun Mar 29 2020 21:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47255 * 2 1 4 4 C 1.36876 * 120.00343 * 278.24314 * 3 2 1 5 5 H 1.08002 * 120.00276 * 178.54731 * 4 3 2 6 6 C 1.39046 * 119.99591 * 358.54773 * 4 3 2 7 7 N 1.31368 * 120.00184 * 13.17222 * 6 4 3 8 8 Si 1.86802 * 120.00058 * 193.17129 * 6 4 3 9 9 H 1.48503 * 109.46908 * 59.99908 * 8 6 4 10 10 H 1.48499 * 109.47433 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46913 * 300.00186 * 8 6 4 12 12 C 1.34774 * 120.00019 * 98.24479 * 3 2 1 13 13 O 1.21594 * 120.00044 * 185.95404 * 12 3 2 14 14 C 1.47723 * 120.00248 * 5.94963 * 12 3 2 15 15 C 1.39676 * 120.14928 * 315.58476 * 14 12 3 16 16 C 1.37916 * 119.84528 * 180.29549 * 15 14 12 17 17 C 1.38402 * 120.14788 * 359.44490 * 16 15 14 18 18 C 1.38349 * 120.30868 * 0.28372 * 17 16 15 19 19 C 1.50699 * 119.92495 * 180.02562 * 18 17 16 20 20 C 1.37966 * 120.15159 * 359.97438 * 18 17 16 21 21 H 1.09005 * 109.46805 * 191.69662 * 1 2 3 22 22 H 1.09002 * 109.46439 * 311.69052 * 1 2 3 23 23 H 1.08997 * 109.47130 * 71.69145 * 1 2 3 24 24 H 1.09003 * 109.46768 * 240.00143 * 2 1 3 25 25 H 1.09001 * 109.47468 * 120.00377 * 2 1 3 26 26 H 0.96998 * 119.99951 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.07723 * 0.02562 * 15 14 12 28 28 H 1.07996 * 119.92585 * 179.72963 * 16 15 14 29 29 H 1.07999 * 119.84455 * 180.25922 * 17 16 15 30 30 H 1.08996 * 109.47591 * 89.99279 * 19 18 17 31 31 H 1.09000 * 109.47368 * 209.99895 * 19 18 17 32 32 H 1.09004 * 109.46870 * 329.99763 * 19 18 17 33 33 H 1.07994 * 120.07385 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0863 2.0831 -1.1731 5 1 2.4241 3.1089 -1.1698 6 6 1.7204 1.4754 -2.3690 7 7 1.0716 0.3332 -2.3538 8 14 2.1513 2.2832 -3.9973 9 1 3.6256 2.4263 -4.1039 10 1 1.6531 1.4415 -5.1147 11 1 1.5174 3.6243 -4.0676 12 6 2.4008 1.9607 1.1551 13 8 2.7030 3.1383 1.1736 14 6 2.4528 1.1653 2.3988 15 6 1.4085 0.2946 2.7189 16 6 1.4607 -0.4404 3.8847 17 6 2.5499 -0.3254 4.7308 18 6 3.5904 0.5308 4.4171 19 6 4.7725 0.6488 5.3443 20 6 3.5487 1.2760 3.2568 21 1 -0.3633 -1.0064 0.2084 22 1 -0.3632 0.6835 0.7675 23 1 -0.3633 0.3228 -0.9756 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.8167 -0.0908 -3.1881 27 1 0.5602 0.2006 2.0573 28 1 0.6520 -1.1107 4.1357 29 1 2.5877 -0.9065 5.6404 30 1 5.5300 -0.0824 5.0623 31 1 5.1917 1.6524 5.2727 32 1 4.4507 0.4617 6.3688 33 1 4.3614 1.9443 3.0133 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:51 Heat of formation + Delta-G solvation = -5.593731 kcal Electronic energy + Delta-G solvation = -16395.284467 eV Core-core repulsion = 13807.180993 eV Total energy + Delta-G solvation = -2588.103474 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19129 -39.25854 -37.20127 -34.31938 -33.21201 -31.87402 -31.38074 -27.79024 -27.16116 -24.47568 -23.72985 -22.55015 -20.81708 -18.86834 -17.97574 -17.52957 -16.57513 -16.34066 -15.97948 -15.40509 -15.10884 -14.85406 -14.50231 -14.28810 -13.88379 -13.64637 -13.09909 -12.99784 -12.92285 -12.78416 -12.60859 -12.37050 -12.11193 -12.06442 -11.79570 -11.75514 -10.82010 -10.48699 -9.85897 -9.76281 -9.46065 -8.25696 -5.90933 0.17352 0.47357 1.38325 1.40482 1.50502 2.01387 2.23856 2.83639 2.99700 3.13749 3.88133 3.98769 4.06731 4.22954 4.44670 4.48793 4.58001 4.78096 4.84111 4.88338 4.92479 4.98502 5.07533 5.11879 5.31982 5.33419 5.52422 5.57919 5.58860 5.66512 5.96965 6.01632 6.11726 6.50420 7.11006 7.41037 7.97408 8.58526 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.039608 B = 0.007460 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.758590 B = 3752.504499 C = 4213.627113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.109 3.891 3 N -0.437 5.437 4 C -0.345 4.345 5 H 0.073 0.927 6 C 0.001 3.999 7 N -0.867 5.867 8 Si 0.994 3.006 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.276 1.276 12 C 0.450 3.550 13 O -0.649 6.649 14 C -0.119 4.119 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.094 4.094 19 C -0.108 4.108 20 C -0.105 4.105 21 H 0.070 0.930 22 H 0.023 0.977 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.276 0.724 27 H 0.135 0.865 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -7.996 10.213 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.013 4.013 3 N -0.152 5.152 4 C -0.473 4.473 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.506 5.506 8 Si 0.817 3.183 9 H -0.201 1.201 10 H -0.186 1.186 11 H -0.202 1.202 12 C 0.241 3.759 13 O -0.540 6.540 14 C -0.122 4.122 15 C -0.146 4.146 16 C -0.134 4.134 17 C -0.125 4.125 18 C -0.094 4.094 19 C -0.164 4.164 20 C -0.124 4.124 21 H 0.089 0.911 22 H 0.042 0.958 23 H 0.094 0.906 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.963 -7.616 10.002 12.608 hybrid contribution 0.113 0.887 -1.199 1.496 sum 1.076 -6.729 8.803 11.132 Atomic orbital electron populations 1.22191 0.95362 1.00136 1.01987 1.22093 0.95689 0.81743 1.01800 1.44013 1.52591 1.13064 1.05501 1.19724 1.44624 0.98109 0.84840 0.90882 1.26010 0.94950 0.97197 1.01952 1.70146 1.34557 1.17496 1.28383 0.85000 0.78556 0.78093 0.76639 1.20126 1.18559 1.20189 1.18737 0.85199 0.87308 0.84653 1.90519 1.58476 1.18284 1.86741 1.20019 0.97900 0.98979 0.95296 1.21997 0.98360 0.95533 0.98664 1.21448 0.99646 0.99329 0.92973 1.21554 0.92560 0.97858 1.00548 1.20193 0.98323 0.96270 0.94660 1.20825 0.94516 1.02781 0.98318 1.21086 0.96908 0.99707 0.94734 0.91134 0.95826 0.90642 0.88364 0.92070 0.91335 0.84726 0.82316 0.81921 0.89998 0.91977 0.88957 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 8.51 71.98 0.61 -5.28 16 2 C 0.11 5.08 4.88 86.38 0.42 5.51 16 3 N -0.44 -24.17 2.64 -638.95 -1.69 -25.85 16 4 C -0.35 -20.33 9.49 84.10 0.80 -19.53 16 5 H 0.07 4.65 7.20 -2.91 -0.02 4.63 16 6 C 0.00 0.05 5.33 84.96 0.45 0.50 16 7 N -0.87 -43.24 7.28 21.68 0.16 -43.08 16 8 Si 0.99 42.30 29.57 68.60 2.03 44.33 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.45 25.12 7.23 86.75 0.63 25.75 16 13 O -0.65 -41.42 16.57 -4.01 -0.07 -41.48 16 14 C -0.12 -5.29 5.13 -20.09 -0.10 -5.39 16 15 C -0.13 -4.65 7.39 22.54 0.17 -4.48 16 16 C -0.12 -3.13 10.03 22.23 0.22 -2.91 16 17 C -0.11 -2.58 9.69 22.34 0.22 -2.37 16 18 C -0.09 -2.69 5.87 -19.90 -0.12 -2.81 16 19 C -0.11 -2.16 10.01 71.24 0.71 -1.45 16 20 C -0.10 -4.08 9.34 22.54 0.21 -3.87 16 21 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 22 H 0.02 0.99 6.60 -2.39 -0.02 0.97 16 23 H 0.08 3.59 5.84 -2.39 -0.01 3.58 16 24 H 0.10 4.91 5.73 -2.39 -0.01 4.90 16 25 H 0.06 2.59 4.96 -2.39 -0.01 2.58 16 26 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 27 H 0.14 5.01 3.73 -2.91 -0.01 5.00 16 28 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.29 8.08 -2.39 -0.02 1.28 16 32 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -70.11 269.30 5.77 -64.33 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.12 Total: 18.08 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.22 Total: -16.34 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.53 Total: -68.93 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.07 Total: -41.48 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -70.11 5.77 -64.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.741 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds