Wall clock time and date at job start Sun Mar 29 2020 22:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00231 * 2 1 4 4 H 1.08003 * 120.00133 * 154.85380 * 3 2 1 5 5 C 1.38819 * 119.99850 * 334.85678 * 3 2 1 6 6 N 1.31618 * 119.99851 * 3.93731 * 5 3 2 7 7 Si 1.86794 * 119.99903 * 183.93754 * 5 3 2 8 8 H 1.48499 * 109.47107 * 84.99960 * 7 5 3 9 9 H 1.48506 * 109.47111 * 204.99606 * 7 5 3 10 10 H 1.48495 * 109.47415 * 324.99674 * 7 5 3 11 11 C 1.46498 * 119.99917 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47533 * 270.00025 * 11 2 1 13 13 H 1.09006 * 109.46949 * 55.00039 * 12 11 2 14 14 C 1.52999 * 109.47325 * 295.00172 * 12 11 2 15 15 C 1.53003 * 109.47199 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46909 * 59.99995 * 15 14 12 17 17 C 1.52999 * 109.47194 * 300.00008 * 16 15 14 18 18 F 1.39892 * 109.47267 * 299.99914 * 17 16 15 19 19 F 1.39906 * 109.47193 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.47195 * 174.99915 * 12 11 2 21 21 H 1.08997 * 109.46792 * 84.47442 * 1 2 3 22 22 H 1.08998 * 109.47161 * 204.47603 * 1 2 3 23 23 H 1.09009 * 109.47023 * 324.47701 * 1 2 3 24 24 H 0.96998 * 120.00190 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.46813 * 30.00791 * 11 2 1 26 26 H 1.09006 * 109.46754 * 150.00086 * 11 2 1 27 27 H 1.08993 * 109.47226 * 299.99696 * 14 12 11 28 28 H 1.09002 * 109.46721 * 60.00034 * 14 12 11 29 29 H 1.09002 * 109.46910 * 300.00209 * 15 14 12 30 30 H 1.08996 * 109.46912 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.47448 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47160 * 60.00366 * 16 15 14 33 33 H 1.09001 * 109.47270 * 299.99975 * 20 12 11 34 34 H 1.09002 * 109.47160 * 60.00696 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1530 1.2302 0.3974 5 6 1.5543 2.3312 -0.5108 6 7 0.3051 2.2952 -0.9237 7 14 2.5260 3.9232 -0.6122 8 1 3.3136 3.9431 -1.8710 9 1 1.5903 5.0762 -0.5955 10 1 3.4467 4.0161 0.5492 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 1.5061 -1.7541 1.9823 14 6 3.3823 -0.7054 2.1269 15 6 3.6368 -1.1462 3.5697 16 6 4.2901 -2.5297 3.5726 17 6 3.3602 -3.5341 2.8889 18 9 2.1455 -3.5907 3.5804 19 9 3.9574 -4.7994 2.8920 20 6 3.1060 -3.0932 1.4455 21 1 -0.3633 0.0990 -1.0229 22 1 -0.3633 -0.9353 0.4258 23 1 -0.3633 0.8365 0.5972 24 1 -0.1109 3.0953 -1.2809 25 1 1.6084 -2.0285 -0.5131 26 1 3.1499 -1.1385 -0.5133 27 1 4.3286 -0.6611 1.5879 28 1 2.9166 0.2802 2.1252 29 1 2.6903 -1.1902 4.1085 30 1 4.2988 -0.4304 4.0569 31 1 4.4718 -2.8436 4.6005 32 1 5.2366 -2.4857 3.0338 33 1 2.4435 -3.8088 0.9585 34 1 4.0524 -3.0489 0.9066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300938443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:59 Heat of formation + Delta-G solvation = -100.145128 kcal Electronic energy + Delta-G solvation = -17431.951194 eV Core-core repulsion = 14421.351229 eV Total energy + Delta-G solvation = -3010.599965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.77727 -46.76463 -37.96930 -35.10976 -32.04260 -30.38897 -29.38333 -25.90560 -25.64895 -22.48160 -22.11933 -20.40753 -19.44134 -16.98327 -16.82938 -16.30022 -16.02333 -15.06902 -14.39298 -14.12391 -13.61274 -13.48189 -13.28118 -13.06292 -12.86469 -12.60636 -12.38077 -11.99111 -11.58462 -11.33714 -11.12529 -10.87280 -10.78228 -10.73233 -10.37329 -10.22158 -10.13845 -9.90450 -9.67376 -9.60343 -8.48198 -6.68393 -5.70968 -3.17563 3.37909 3.43686 3.44874 3.94785 4.29133 4.49302 4.54724 4.58888 5.17435 5.27884 5.39193 5.44031 5.53811 5.56053 5.72179 5.83840 5.88617 6.03318 6.10633 6.18807 6.29612 6.50798 6.59424 6.68553 6.86575 7.00326 7.02876 7.53930 7.78614 7.88709 8.44635 9.28711 9.90750 10.41053 11.33822 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.041154 B = 0.006943 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.206698 B = 4031.828721 C = 4366.908681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.910 5.910 7 Si 0.902 3.098 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.159 3.841 12 C -0.106 4.106 13 H 0.071 0.929 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.154 4.154 17 C 0.286 3.714 18 F -0.201 7.201 19 F -0.211 7.211 20 C -0.150 4.150 21 H 0.024 0.976 22 H -0.010 1.010 23 H 0.052 0.948 24 H 0.252 0.748 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -9.095 6.828 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.327 5.327 3 C -0.382 4.382 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.556 5.556 7 Si 0.732 3.268 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.031 3.969 12 C -0.128 4.128 13 H 0.090 0.910 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.192 4.192 17 C 0.250 3.750 18 F -0.182 7.182 19 F -0.192 7.192 20 C -0.189 4.189 21 H 0.042 0.958 22 H 0.009 0.991 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.289 -8.966 6.762 12.872 hybrid contribution 0.416 0.681 0.028 0.799 sum 6.706 -8.285 6.790 12.638 Atomic orbital electron populations 1.20860 0.82488 0.95269 0.99205 1.43865 1.01894 1.00506 1.86418 1.19232 0.98954 0.86362 1.33614 0.91004 1.25176 0.96541 0.98752 0.99052 1.70088 1.11201 1.27864 1.46414 0.86321 0.79226 0.83313 0.77977 1.21416 1.21759 1.20619 1.20710 0.96101 0.88539 0.91543 1.21886 0.98482 0.90749 1.01678 0.91025 1.21692 0.99323 1.01343 0.92818 1.21575 1.00873 0.93899 0.99359 1.22499 0.99100 0.96002 1.01607 1.21247 0.79317 0.79970 0.94431 1.92971 1.47075 1.96567 1.81618 1.92969 1.84116 1.44643 1.97513 1.22575 1.03755 1.00310 0.92231 0.95804 0.99139 0.92962 0.93790 0.94586 0.93462 0.92515 0.88617 0.91374 0.91195 0.90430 0.89194 0.90141 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.13 8.94 59.85 0.54 4.67 16 2 N -0.60 -14.79 2.81 -181.12 -0.51 -15.30 16 3 C -0.25 -6.64 8.26 -15.06 -0.12 -6.77 16 4 H 0.07 1.81 6.56 -52.48 -0.34 1.47 16 5 C 0.00 0.07 5.38 -17.43 -0.09 -0.02 16 6 N -0.91 -26.30 10.12 55.49 0.56 -25.73 16 7 Si 0.90 21.48 29.56 -169.99 -5.02 16.45 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 C 0.16 3.15 5.15 -4.05 -0.02 3.12 16 12 C -0.11 -1.80 2.27 -90.62 -0.21 -2.00 16 13 H 0.07 1.34 7.80 -51.93 -0.41 0.93 16 14 C -0.11 -1.87 4.39 -26.73 -0.12 -1.99 16 15 C -0.12 -1.63 5.80 -26.73 -0.16 -1.78 16 16 C -0.15 -1.89 5.45 -26.73 -0.15 -2.04 16 17 C 0.29 4.05 2.10 -26.71 -0.06 3.99 16 18 F -0.20 -3.21 16.02 2.25 0.04 -3.18 16 19 F -0.21 -3.07 17.06 2.25 0.04 -3.03 16 20 C -0.15 -2.12 4.74 -26.71 -0.13 -2.25 16 21 H 0.02 0.64 7.44 -51.93 -0.39 0.25 16 22 H -0.01 -0.22 8.03 -51.93 -0.42 -0.64 16 23 H 0.05 1.40 7.02 -51.92 -0.36 1.04 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 26 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.10 1.88 6.01 -51.93 -0.31 1.57 16 29 H 0.07 0.98 7.80 -51.93 -0.41 0.58 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -28.50 273.32 -6.43 -34.93 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.14 Total: -3.20 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.51 Total: -5.06 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.05 Total: -41.04 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.07 Total: -6.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.50 -6.43 -34.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300938443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.213 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds