Wall clock time and date at job start Sun Mar 29 2020 22:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00231 * 2 1 4 4 H 1.08003 * 120.00133 * 154.85380 * 3 2 1 5 5 C 1.38819 * 119.99850 * 334.85678 * 3 2 1 6 6 N 1.31618 * 119.99851 * 3.93731 * 5 3 2 7 7 Si 1.86794 * 119.99903 * 183.93754 * 5 3 2 8 8 H 1.48499 * 109.47107 * 84.99960 * 7 5 3 9 9 H 1.48506 * 109.47111 * 204.99606 * 7 5 3 10 10 H 1.48495 * 109.47415 * 324.99674 * 7 5 3 11 11 C 1.46498 * 119.99917 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47533 * 270.00025 * 11 2 1 13 13 H 1.09006 * 109.46949 * 55.00039 * 12 11 2 14 14 C 1.52999 * 109.47325 * 295.00172 * 12 11 2 15 15 C 1.53003 * 109.47199 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46909 * 59.99995 * 15 14 12 17 17 C 1.52999 * 109.47194 * 300.00008 * 16 15 14 18 18 F 1.39892 * 109.47267 * 299.99914 * 17 16 15 19 19 F 1.39906 * 109.47193 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.47195 * 174.99915 * 12 11 2 21 21 H 1.08997 * 109.46792 * 84.47442 * 1 2 3 22 22 H 1.08998 * 109.47161 * 204.47603 * 1 2 3 23 23 H 1.09009 * 109.47023 * 324.47701 * 1 2 3 24 24 H 0.96998 * 120.00190 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.46813 * 30.00791 * 11 2 1 26 26 H 1.09006 * 109.46754 * 150.00086 * 11 2 1 27 27 H 1.08993 * 109.47226 * 299.99696 * 14 12 11 28 28 H 1.09002 * 109.46721 * 60.00034 * 14 12 11 29 29 H 1.09002 * 109.46910 * 300.00209 * 15 14 12 30 30 H 1.08996 * 109.46912 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.47448 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47160 * 60.00366 * 16 15 14 33 33 H 1.09001 * 109.47270 * 299.99975 * 20 12 11 34 34 H 1.09002 * 109.47160 * 60.00696 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1530 1.2302 0.3974 5 6 1.5543 2.3312 -0.5108 6 7 0.3051 2.2952 -0.9237 7 14 2.5260 3.9232 -0.6122 8 1 3.3136 3.9431 -1.8710 9 1 1.5903 5.0762 -0.5955 10 1 3.4467 4.0161 0.5492 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 1.5061 -1.7541 1.9823 14 6 3.3823 -0.7054 2.1269 15 6 3.6368 -1.1462 3.5697 16 6 4.2901 -2.5297 3.5726 17 6 3.3602 -3.5341 2.8889 18 9 2.1455 -3.5907 3.5804 19 9 3.9574 -4.7994 2.8920 20 6 3.1060 -3.0932 1.4455 21 1 -0.3633 0.0990 -1.0229 22 1 -0.3633 -0.9353 0.4258 23 1 -0.3633 0.8365 0.5972 24 1 -0.1109 3.0953 -1.2809 25 1 1.6084 -2.0285 -0.5131 26 1 3.1499 -1.1385 -0.5133 27 1 4.3286 -0.6611 1.5879 28 1 2.9166 0.2802 2.1252 29 1 2.6903 -1.1902 4.1085 30 1 4.2988 -0.4304 4.0569 31 1 4.4718 -2.8436 4.6005 32 1 5.2366 -2.4857 3.0338 33 1 2.4435 -3.8088 0.9585 34 1 4.0524 -3.0489 0.9066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300938443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:58 Heat of formation + Delta-G solvation = -115.131257 kcal Electronic energy + Delta-G solvation = -17432.601041 eV Core-core repulsion = 14421.351229 eV Total energy + Delta-G solvation = -3011.249813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.91671 -47.91436 -39.34155 -36.84163 -33.69280 -31.94555 -30.67527 -27.90462 -27.26537 -23.76355 -23.62812 -21.90378 -20.74356 -18.71264 -18.12556 -17.55034 -17.29726 -16.76953 -15.88870 -15.47148 -15.19721 -14.86720 -14.77445 -14.38246 -14.25336 -14.09594 -13.56063 -13.24761 -13.15329 -12.85625 -12.76997 -12.65368 -12.33572 -12.24958 -12.05901 -11.94825 -11.70641 -11.42733 -11.23782 -10.97292 -10.54030 -8.67759 -7.77650 -5.25365 1.49131 1.50177 1.57783 2.53573 2.85826 3.20043 3.37938 3.44138 3.48156 3.81160 4.02807 4.17337 4.31957 4.43308 4.45679 4.55983 4.71086 4.77091 4.88153 4.93268 4.96355 5.03532 5.10610 5.26182 5.30486 5.44943 5.61125 5.64041 5.72473 5.80157 6.40529 7.22682 7.93760 8.39783 9.26787 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.041154 B = 0.006943 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.206698 B = 4031.828721 C = 4366.908681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.620 5.620 3 C -0.247 4.247 4 H 0.084 0.916 5 C -0.060 4.060 6 N -0.946 5.946 7 Si 0.965 3.035 8 H -0.286 1.286 9 H -0.300 1.300 10 H -0.266 1.266 11 C 0.156 3.844 12 C -0.095 4.095 13 H 0.050 0.950 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.282 3.718 18 F -0.215 7.215 19 F -0.211 7.211 20 C -0.145 4.145 21 H -0.002 1.002 22 H 0.016 0.984 23 H 0.023 0.977 24 H 0.244 0.756 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 -9.987 7.620 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.343 5.343 3 C -0.377 4.377 4 H 0.101 0.899 5 C -0.254 4.254 6 N -0.594 5.594 7 Si 0.793 3.207 8 H -0.213 1.213 9 H -0.227 1.227 10 H -0.191 1.191 11 C 0.030 3.970 12 C -0.116 4.116 13 H 0.068 0.932 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.186 4.186 17 C 0.247 3.753 18 F -0.196 7.196 19 F -0.193 7.193 20 C -0.183 4.183 21 H 0.016 0.984 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.499 -9.895 7.572 15.082 hybrid contribution -0.260 0.868 -0.201 0.928 sum 8.239 -9.027 7.371 14.272 Atomic orbital electron populations 1.20543 0.83289 0.95272 0.97222 1.44104 1.01829 1.01839 1.86574 1.19620 0.99127 0.87020 1.31904 0.89865 1.25940 0.97465 1.02095 0.99871 1.70279 1.12710 1.28141 1.48242 0.85310 0.77795 0.79321 0.78226 1.21267 1.22721 1.19105 1.20900 0.95847 0.86689 0.93598 1.21596 0.98144 0.92767 0.99070 0.93153 1.21596 0.99151 0.99204 0.94960 1.21487 1.00958 0.95387 0.97221 1.22501 0.99136 0.94093 1.02841 1.21423 0.79248 0.80377 0.94296 1.92952 1.48134 1.96644 1.81896 1.92970 1.84013 1.44767 1.97502 1.22501 1.04634 0.98237 0.92944 0.98382 0.96582 0.95825 0.94625 0.93810 0.92883 0.91365 0.92295 0.92667 0.89312 0.88768 0.87054 0.89753 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.23 8.94 127.77 1.14 10.37 16 2 N -0.62 -30.37 2.81 -726.93 -2.04 -32.41 16 3 C -0.25 -12.95 8.26 84.03 0.69 -12.26 16 4 H 0.08 4.10 6.56 -2.91 -0.02 4.08 16 5 C -0.06 -3.32 5.38 84.86 0.46 -2.86 16 6 N -0.95 -56.12 10.12 21.65 0.22 -55.91 16 7 Si 0.96 44.40 29.56 68.60 2.03 46.42 16 8 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 9 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.16 5.96 5.15 86.38 0.44 6.41 16 12 C -0.09 -3.04 2.27 -10.80 -0.02 -3.06 16 13 H 0.05 1.84 7.80 -2.38 -0.02 1.82 16 14 C -0.11 -3.44 4.39 30.60 0.13 -3.30 16 15 C -0.11 -2.78 5.80 30.59 0.18 -2.60 16 16 C -0.15 -3.09 5.45 30.59 0.17 -2.92 16 17 C 0.28 7.17 2.10 30.61 0.06 7.23 16 18 F -0.21 -6.48 16.02 44.97 0.72 -5.76 16 19 F -0.21 -5.49 17.06 44.97 0.77 -4.72 16 20 C -0.14 -3.68 4.74 30.61 0.15 -3.54 16 21 H 0.00 -0.12 7.44 -2.39 -0.02 -0.14 16 22 H 0.02 0.70 8.03 -2.39 -0.02 0.68 16 23 H 0.02 1.30 7.02 -2.38 -0.02 1.28 16 24 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.04 1.60 8.07 -2.39 -0.02 1.58 16 26 H 0.05 1.97 8.04 -2.38 -0.02 1.95 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 2.26 6.01 -2.39 -0.01 2.25 16 29 H 0.05 1.50 7.80 -2.39 -0.02 1.48 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -61.36 273.32 6.16 -55.19 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.07 Total: 3.72 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.40 Total: -6.54 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.82 Total: -88.32 kcal Atomic # 9 Polarization: -11.96 SS G_CDS: 1.49 Total: -10.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.36 6.16 -55.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300938443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.940 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds