Wall clock time and date at job start Sun Mar 29 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99815 * 2 1 4 4 H 1.09006 * 110.34429 * 332.12512 * 3 2 1 5 5 C 1.51364 * 110.30854 * 94.25108 * 3 2 1 6 6 C 1.38497 * 130.39070 * 281.74227 * 5 3 2 7 7 C 1.38108 * 120.21236 * 179.97438 * 6 5 3 8 8 C 1.38248 * 119.93659 * 359.97438 * 7 6 5 9 9 C 1.38106 * 119.93455 * 0.02562 * 8 7 6 10 10 C 1.38212 * 109.75887 * 101.73047 * 5 3 2 11 11 C 1.51371 * 109.75916 * 0.02562 * 10 5 3 12 12 C 1.54344 * 105.17002 * 17.18415 * 11 10 5 13 13 H 1.09002 * 110.82327 * 91.87895 * 12 11 10 14 14 N 1.46498 * 110.99015 * 215.35342 * 12 11 10 15 15 C 1.36938 * 119.99941 * 270.77039 * 14 12 11 16 16 H 1.07999 * 120.00071 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00020 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00383 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00047 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47093 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47353 * 120.00258 * 19 17 15 22 22 H 1.48506 * 109.47122 * 240.00280 * 19 17 15 23 23 H 1.08993 * 109.47369 * 300.00030 * 1 2 3 24 24 H 1.09000 * 109.47011 * 60.00838 * 1 2 3 25 25 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.89865 * 0.02562 * 6 5 3 27 27 H 1.08004 * 120.02690 * 180.02562 * 7 6 5 28 28 H 1.08003 * 120.03438 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.89113 * 179.97438 * 9 8 7 30 30 H 1.09002 * 110.30129 * 258.25994 * 11 10 5 31 31 H 1.09002 * 110.30208 * 136.10916 * 11 10 5 32 32 H 0.97003 * 120.00543 * 90.77252 * 14 12 11 33 33 H 0.96991 * 120.00795 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0191 -0.4779 5 6 2.3200 1.7426 1.4156 6 6 1.4859 2.2345 2.4059 7 6 1.9995 2.5727 3.6425 8 6 3.3503 2.4197 3.8938 9 6 4.1836 1.9293 2.9077 10 6 3.6706 1.5903 1.6667 11 6 4.3610 1.0410 0.4367 12 6 3.3734 1.2856 -0.7239 13 1 3.5708 2.2434 -1.2054 14 7 3.4290 0.1938 -1.6992 15 6 4.3119 0.2535 -2.7442 16 1 4.9675 1.1053 -2.8492 17 6 4.3649 -0.7813 -3.6680 18 7 3.5663 -1.8196 -3.5398 19 14 5.5698 -0.7002 -5.0932 20 1 6.3491 0.5613 -5.0113 21 1 6.4960 -1.8589 -5.0250 22 1 4.8225 -0.7386 -6.3759 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.4304 2.3532 2.2107 27 1 1.3463 2.9557 4.4126 28 1 3.7536 2.6833 4.8604 29 1 5.2389 1.8104 3.1047 30 1 4.5501 -0.0261 0.5539 31 1 5.2948 1.5739 0.2574 32 1 2.8404 -0.5715 -1.6047 33 1 3.6031 -2.5424 -4.1854 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334739901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:52 Heat of formation + Delta-G solvation = -1.760200 kcal Electronic energy + Delta-G solvation = -16212.733716 eV Core-core repulsion = 13624.796476 eV Total energy + Delta-G solvation = -2587.937240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97819 -37.21418 -35.12222 -33.03379 -30.91496 -30.42628 -27.40139 -26.84851 -25.38606 -23.61400 -21.67018 -20.60741 -19.86476 -17.33462 -16.46986 -16.03390 -15.22046 -15.09358 -14.37723 -14.25468 -14.00991 -13.59054 -12.95130 -12.87593 -12.61678 -12.33335 -11.95623 -11.48701 -11.05208 -10.95939 -10.82283 -10.71560 -10.54295 -10.42522 -9.97258 -9.67140 -9.16579 -8.88651 -8.64043 -8.27929 -6.92053 -5.72315 -3.01516 1.53635 1.62378 3.45245 3.50763 3.53161 3.89038 4.40464 4.59808 4.81267 5.04242 5.12964 5.20072 5.37490 5.52431 5.60772 5.70835 5.71261 5.76010 5.83022 5.98615 6.08271 6.13848 6.20320 6.31073 6.58476 6.60746 6.66757 6.67152 6.96276 7.01584 7.23227 7.63924 7.75335 8.46582 9.58800 10.17603 10.56580 11.49807 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.006891 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.531337 B = 4062.071873 C = 4634.714051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.119 3.881 4 H 0.065 0.935 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.137 4.137 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.064 4.064 11 C -0.109 4.109 12 C 0.186 3.814 13 H 0.069 0.931 14 N -0.708 5.708 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.928 5.928 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 H 0.032 0.968 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 8.198 12.319 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.060 3.940 4 H 0.083 0.917 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.155 4.155 8 C -0.135 4.135 9 C -0.138 4.138 10 C -0.064 4.064 11 C -0.150 4.150 12 C 0.074 3.926 13 H 0.087 0.913 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.013 8.038 12.138 15.101 hybrid contribution 0.232 -0.039 -0.546 0.594 sum -3.781 7.999 11.592 14.582 Atomic orbital electron populations 1.22757 0.82118 1.02443 0.99117 1.88011 1.18661 1.26221 1.94306 1.21926 0.97105 0.84887 0.90049 0.91743 1.21134 0.94753 0.99359 0.97064 1.20618 0.98932 0.99116 0.92893 1.20918 0.95498 1.02337 0.96726 1.20984 0.93788 1.00054 0.98719 1.20683 0.99750 1.00657 0.92672 1.20891 0.95112 0.95458 0.94961 1.22115 0.99581 1.01504 0.91784 1.20924 0.89079 0.93783 0.88814 0.91326 1.42298 1.45251 1.20952 1.26472 1.19327 1.12930 1.03440 1.01746 0.91105 1.24755 0.99733 0.96911 0.99374 1.69700 1.40659 1.09519 1.37658 0.86139 0.80474 0.77208 0.82488 1.20545 1.21879 1.21902 0.94974 0.94119 0.89875 0.86906 0.86413 0.86373 0.86456 0.89410 0.91437 0.76662 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.59 16 2 O -0.35 -7.00 8.85 -35.23 -0.31 -7.32 16 3 C 0.12 2.20 3.26 -26.85 -0.09 2.12 16 4 H 0.06 1.09 7.82 -51.93 -0.41 0.69 16 5 C -0.12 -2.05 5.81 -104.21 -0.61 -2.66 16 6 C -0.10 -1.39 10.04 -39.53 -0.40 -1.78 16 7 C -0.14 -1.73 10.05 -39.63 -0.40 -2.13 16 8 C -0.12 -1.49 10.05 -39.63 -0.40 -1.89 16 9 C -0.12 -1.74 10.04 -39.53 -0.40 -2.14 16 10 C -0.06 -1.08 6.14 -104.21 -0.64 -1.72 16 11 C -0.11 -2.10 6.50 -26.85 -0.17 -2.27 16 12 C 0.19 3.89 3.65 -66.52 -0.24 3.65 16 13 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 14 N -0.71 -18.32 5.16 -52.05 -0.27 -18.59 16 15 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 30 H 0.09 1.86 8.08 -51.93 -0.42 1.44 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 11.10 6.47 -40.82 -0.26 10.83 16 33 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -31.22 281.17 -7.57 -38.78 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.44 Total: 7.76 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.49 Total: -14.61 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.46 Total: -46.27 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.31 Total: -7.32 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.22 -7.57 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334739901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.024 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds